| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3307 |
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| Symbol | |
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| ID | 4923945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3949093 |
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| End bp | 3949644 |
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| Gene Length | 552 bp |
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| Protein Length | 183 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164919 |
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| Product | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
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| Protein accession | YP_001095432 |
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| Protein GI | 127514235 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1778] Low specificity phosphatase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.577885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.762082 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACATC AAGGTTTTTA CGGCCCGATA ACCGACGCAG TCTGGCAGAA GGCTAAACAG
ATCAAACTCT TGATCTGCGA CGTCGACGGC GTCTTCTCCG ATGGCTTAGT CTATATGAGC
AATTCGGGCG ACGAACTCAA GACCTTCCAT ACCCGCGACG GCTATGGCGT CCGCTCGCTG
CTGACCAGCG ATATTCCGGT GGCCATCATC ACGGGGCGTA AGTCGCAGAT AGTGGAAGAT
CGCATGACGG CCCTGGGTAT CACCCACATC TACCAGGGCG TCGACAACAA GCTCGAGCCT
TATCAGGAGC TGCTTAACCT CTATAAGGTG AGGCCTGAGG AAGTTGCCTA TATTGGCGAT
GACATGGTGG ATCTGCCCGT GATGGAGCAG GTTGGCCTGT CTGTCTGCGT GGCCGACGGT
CATCCCTATG TACGCCAACA CGCCGACATG GTTACCCATA TCAAGGGCGG CCACGGCGCA
TTGCGTGAAT TGACGGATCT CATCCTGCTC AGCCAGGATA AGTTTGCCTC GGCCCACGGA
ATGAGCATAT GA
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| Protein sequence | MAHQGFYGPI TDAVWQKAKQ IKLLICDVDG VFSDGLVYMS NSGDELKTFH TRDGYGVRSL
LTSDIPVAII TGRKSQIVED RMTALGITHI YQGVDNKLEP YQELLNLYKV RPEEVAYIGD
DMVDLPVMEQ VGLSVCVADG HPYVRQHADM VTHIKGGHGA LRELTDLILL SQDKFASAHG
MSI
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