| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3305 |
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| Symbol | |
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| ID | 4923943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3947121 |
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| End bp | 3948080 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164917 |
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| Product | CaCA family Na(+)/Ca(+) antiporter |
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| Protein accession | YP_001095430 |
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| Protein GI | 127514233 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0530] Ca2+/Na+ antiporter |
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| TIGRFAM ID | [TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.568121 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTATTTA ATATTTTCTT ACTGATTGCT GGTTTGGGTG CCCTTGTCTG GAGTGCCGAC
AAATTTGTCT TCGGCGCCGC GGCATTCGCC CGTAATCTCG GCCTGCCGCC CATGTTAATT
GGCCTCACCA TAGTCGCCAT GGGCAGCTCG GCCCCGGAAA TGTTTGTGGC AGCCACCGCC
TCCCTCGAAG GCATGACAGA CACCGCCATA GGGAATGTCC TGGGCTCCAA CGTCGCCAAT
ATCACGCTGA TCCTGGGGAT CACCGCCCTG TTAGGCGCAA TCTCGGTAAG CTCACAGACA
CTCAAGCGAG AAATCCCTAT GATGCTAGGC GCCACGGCGC TGGCGGGCTA TTTCCTTCAC
GATGGCCAGC TGACCCGCGT CGAGGGACTG GTGCTGATGG CACTCTTCTT CGCCCTCATG
GGGTATCTGA TCTGGCATGC GATCGTCAAC AAGGAGAAAG ATCCCCTGAT CGACGAGGCC
GAGAGCGAGG TGCCTAAAGA TGTGCCTACG CCTAAGGCGA TCCTCTGGCT GGTGATTGGC
TTAGTGTTGC TGCCCCTGTC TGCCGACTGG ATGGTGCAGG GCGCCGTGGG TATCGCCAAG
GCCTTCCATA TGTCAGACTT AGTCATAGGC CTGACCATTA TCGCCGTCGG CACCAGCCTG
CCTGAGTTGG CGGCCTGTGT GGCCGGCGTG CTGAAGAAAG AGGACGACCT TGCCATAGGC
AACGTGGTCG GCTCGAACCT GTTTAACATT CTTGCGGTAC TGGCGCTACC CGCCCTTATC
GCCCCAGGCG CAGTAGATGC CGCCGCCAGC AGTCGCGACT TTTACATGGT GATGGCAACC
AGCGTTGCCC TGGCCATACT GATTTTATTA ACCGGCAAGG CCCGCCAACT ACGCCCCTGG
CATGGCGGTG TGTTATTAGC GACTTTTATC GCGTACCAAG TCACACTTTT CCTATCCTAA
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| Protein sequence | MLFNIFLLIA GLGALVWSAD KFVFGAAAFA RNLGLPPMLI GLTIVAMGSS APEMFVAATA
SLEGMTDTAI GNVLGSNVAN ITLILGITAL LGAISVSSQT LKREIPMMLG ATALAGYFLH
DGQLTRVEGL VLMALFFALM GYLIWHAIVN KEKDPLIDEA ESEVPKDVPT PKAILWLVIG
LVLLPLSADW MVQGAVGIAK AFHMSDLVIG LTIIAVGTSL PELAACVAGV LKKEDDLAIG
NVVGSNLFNI LAVLALPALI APGAVDAAAS SRDFYMVMAT SVALAILILL TGKARQLRPW
HGGVLLATFI AYQVTLFLS
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