| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3276 |
|---|
| Symbol | |
|---|
| ID | 4921112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3918735 |
|---|
| End bp | 3920024 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640164888 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001095401 |
|---|
| Protein GI | 127514204 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000341195 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGACTAATT TGTTGATGGC GAAAATATCT CTCACGCGGC TAGCTTCTCG GGCTAGCCGT
CTGTTTTTTA CAGGCTTGCT CGCCTTAGCC ACCCAGCAGG CACTGGCCAG CGATGACCTG
GCACCTCAGG TTCAGGTAAG CAGCGATGAT GGCACCGAGG CCGAGTATGT GGCCGTGCCC
TTCATCTTCG CCACCGAGAG CCTGAGTACC TCTGTAGGCG CCGCCGCTGT GGTCAAGCAT
GCGGGGCAGC GTCAGGCCTC CCTGTTTGCC TTGGGGCTGG GCACGGCCAA CGACTCCTGG
GTCACCTATC TTGGCGCCAA CGACTATCAG CTGCCGGGTG TCGATAGCTG GTTGTTTTCC
GGTGAGTATT ACCGCGCCCG CTACACAGAA GGGATCTTCT ACATTCCCGG GCAAGAGGTG
GGACGCGCCG CCGATGCCCC CGAGCGAGTG GTGACTCAGG GGGATGAATC CTTTGCCAGG
CTGCACCTTA AATATGTGCT GCCCTGGGGG CGAGGCGCCA AGGGAGCGGC CGCTAGTTTG
CGCAGCGCAC CCTTAGGCAG CCAGGAATGG AACCCACTCA CCTCTGGGGT GAGCAGCATA
GAGCTGACCC CTTTTTATAC CGAGCAACGC CTGGAGGGAT ATGAGTCGCT GCCTCAATCG
GCCCGCGGCC TGGAGCTAGA GCTTGCCTGG GACAACCGCG ACGATCGTGA GAACAGCAAG
CAGGGCGGGC GCACCAGCCT GACCCTGACC CGCGACTGGG GCAGTAGCCA GCGTCAGAGC
TGGACCACCT GGGAGTTTGA GCAGAGCCTC TACCTGTCCC TTGGGCAATC TGGCTGGTTC
GACAGTCGGG TATTGGCCTT TAACTTTTAT CTCGCCGACA CCCCTACCTG GAACGACTAT
GACCCGAACA GTCACACCAA CGGGCGTCCG CCTGGATTTG CCGGGGTGGG CCTGGGGGGC
TTTAAGCGCC TGCGTGGTTA CAGCGGCGAT CAGTTCACCG GCCGCAGCGC CTTGTTATAT
GCGGCCGAAT ATCGGCTAGA GCCCAAGTGG CAGCCATTGC AGAGCCTGCC GGTGTTTCGC
TGGTTCGATA TTCCCTGGTG GCAATGGACG GCATTTGTCG AGGCGGGCAA GGTGAGCGAT
GAGTTTGCCT TAGATAGCCT GCACAGCCAG ATGAAAACCA GCTTCGGCGC CGGTATTCGT
TTTGAGGTGG AAGGTGTGGT GGTGCGTACC GATCTCGCCA TCGGCGAGGA GGAAAGCCAG
TTCTGGGTCA TGGTGAACCA GCCTTTCTAA
|
|---|
| Protein sequence | MTNLLMAKIS LTRLASRASR LFFTGLLALA TQQALASDDL APQVQVSSDD GTEAEYVAVP
FIFATESLST SVGAAAVVKH AGQRQASLFA LGLGTANDSW VTYLGANDYQ LPGVDSWLFS
GEYYRARYTE GIFYIPGQEV GRAADAPERV VTQGDESFAR LHLKYVLPWG RGAKGAAASL
RSAPLGSQEW NPLTSGVSSI ELTPFYTEQR LEGYESLPQS ARGLELELAW DNRDDRENSK
QGGRTSLTLT RDWGSSQRQS WTTWEFEQSL YLSLGQSGWF DSRVLAFNFY LADTPTWNDY
DPNSHTNGRP PGFAGVGLGG FKRLRGYSGD QFTGRSALLY AAEYRLEPKW QPLQSLPVFR
WFDIPWWQWT AFVEAGKVSD EFALDSLHSQ MKTSFGAGIR FEVEGVVVRT DLAIGEEESQ
FWVMVNQPF
|
|---|
| |