| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3233 |
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| Symbol | |
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| ID | 4921517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3859531 |
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| End bp | 3860301 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164843 |
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| Product | Crp/FNR family transcriptional regulator |
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| Protein accession | YP_001095358 |
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| Protein GI | 127514161 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAGT CCATATCGAC AGGTAGAACA CAGCAGGGTT ATTTCAGCCC GGTTGAAAAA
CAGATGTTCG GCGCTGCGTT ACTGGCCGAC CCCGACACCT CAAGCCCATT CTCCGATGTA
CTCAGCATTG CAGAAAGTGG ATGTTCAAGC AGTTTGCTAC AGCAACTCAC CAGCGTCACC
AAGCGTTTTC GCCACCTCAA GCCGGAGCAA TATCTGCTGC GCCAACAGGA CCAGTTTGAC
TCGCTGTTTG TGGTCAAGAA GGGCGCCCTC AAGAGCTATC GTCTGACCCC GGAAGGCGAA
GAGATAGTGA CTGGCTTCTA TATGGAGGGC GACGTCATAG GCGCCGGCGG CTTGGGTAAC
CACAAACACT TCTACTCTGT GGTGGCGCTG GAACCTTCGA GCCTGTATGA GATCCCCTTC
GCCAAGTTGC TGCAACAATC CGCCATGGAG CCGATAGTGC AGCAGCTGAT GCTCAAGCTA
CTCAGTCAGG AGATGCAGGC AGATCAAAGC CTGAGACTTA TCCAGCTTAA GCAGGTCAAG
GCGGCCATCG CCTCGCTGAT CCTCAACATC GCCAACCGCC TGACGGCAAC CCAGATCACC
CTGCCCATGA GCCGAGTGGA TATCGCCAAC CTGTTGGGGG TTGCCTCGGA GACCGTCTGC
CGCGAGTTCA CCCGCCTGCA GAAGCAGGGG CTGCTGTCGG TCAACCGTAA GCATATCGTG
ATTAACGATC TTCCCCAGCT GCAGCTGGCG GCGGGCGGAG ATTGCTACTA A
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| Protein sequence | MIKSISTGRT QQGYFSPVEK QMFGAALLAD PDTSSPFSDV LSIAESGCSS SLLQQLTSVT
KRFRHLKPEQ YLLRQQDQFD SLFVVKKGAL KSYRLTPEGE EIVTGFYMEG DVIGAGGLGN
HKHFYSVVAL EPSSLYEIPF AKLLQQSAME PIVQQLMLKL LSQEMQADQS LRLIQLKQVK
AAIASLILNI ANRLTATQIT LPMSRVDIAN LLGVASETVC REFTRLQKQG LLSVNRKHIV
INDLPQLQLA AGGDCY
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