| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3219 |
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| Symbol | |
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| ID | 4921543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3842372 |
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| End bp | 3843283 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164829 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095344 |
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| Protein GI | 127514147 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00312841 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGATT TAAACGGTAT GATGCTCTTT GCGGCCGTCG TTCGCGCCAA GGGTTTCTCC
CAGGCTGCTC GCAATACGGG CATGCCAAAA TCAACCATTA GTCGTAAGGT GGCTCAGCTC
GAAGAGCAGC TAGGCGTGCG CCTGTTGCAA CGCGATACCC GCAATCTCAG CCTGACTCAG
GTTGGAGCGC TTTTTTACCA GCATTGCAGT AGTATTAGCG ATGAAATCGA GGCTGCCAAG
GCAACCATAG AAAATACGCA TAATGATGTA TTTGGTTCAC TGCGCATCGC CATTCCGGTT
TCCTTCAGTC AGGAGCTTAT CGCCAGCCTC TGTAGCAGCT TCATGCGCCT CTACCCCAAC
GTGGATCTCG ACGTCCAATT TACCGACAGT GATGTGGGCC TAGTGGGCGA AGGCTATGAT
ATCGCCATCA AGTATGGGCC GCTGCAATCA TCCGACTTAG TCGCCCGCCT GCTGTTTGAG
CGTCAACCCA TACTGGTGGC TAGCCCTGGT TATCTCAAGG CCAACGGCAC CCCGGCGACA
CCTCAGGATC TCAAAGAGCA CAGCGGCATA CTGCTGGGGA CCTCGCGCTC GGCCCCCATC
TGGCCCCTGG GCAAGGGGGA GCGCAAGACC ATGGTCAACT TCAAGCGTAA GGTGAGGGTG
AACAGCGCCA TCATGGTCAA ACAACTGGTG CTGGACGATT TCGGCATCGC CATGCTCTCT
AATTCAGTAT GTAAGAACGA GCTGGCCGGT GGCAGCCTGG TGCCGCTACT GCAGGAGTGG
CCGATGGAGC CCTTCAAGGT CTATGGCGTC TATTCCAGTC GCCGACAGCT GGCCACCAAC
ATCAGCGTCT TCCTGGATTT CTTCACCAAG CGCTTCAACA GCCACGAGTC GCTTCAGTCT
CTACTCATGT AG
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| Protein sequence | MPDLNGMMLF AAVVRAKGFS QAARNTGMPK STISRKVAQL EEQLGVRLLQ RDTRNLSLTQ
VGALFYQHCS SISDEIEAAK ATIENTHNDV FGSLRIAIPV SFSQELIASL CSSFMRLYPN
VDLDVQFTDS DVGLVGEGYD IAIKYGPLQS SDLVARLLFE RQPILVASPG YLKANGTPAT
PQDLKEHSGI LLGTSRSAPI WPLGKGERKT MVNFKRKVRV NSAIMVKQLV LDDFGIAMLS
NSVCKNELAG GSLVPLLQEW PMEPFKVYGV YSSRRQLATN ISVFLDFFTK RFNSHESLQS
LLM
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