| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3195 |
|---|
| Symbol | |
|---|
| ID | 4921585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3806545 |
|---|
| End bp | 3807150 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640164805 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001095320 |
|---|
| Protein GI | 127514123 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3647] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.769175 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATAAAA GCACCGTGTG GCTCACAATT TTCTTCGCCG TGCTGATCTG GTCAGGGATA
GAACCAAAAG ATAGCTTTAC CTGGTTTTTA GAGGTTGCTC CCGCGCTGAT CGCCCTGCCT
ATCCTCTTTG TGACCCGCAA GAAGTTTCCA CTCACCTCTC TGGCCTACGG CCTGATTCTG
ATCCACGCCA TTATTCTCAT GGTGGGTGGG CACTACACCT ATGCCGAGGT GCCGCTGTTC
GACACCATAG CCGACTGGAT GGGCAGCGAG CGCAATAACT ATGACAAGGT GGGCCATTTC
GCTCAGGGCT TTATTCCCGC GCTGCTGGCC CGTGAGGTGT TTCTGCGCCT CGAAGTGGTG
AAGCAGGGGG CCTGGTGCAA TTTCCTGGTC TGCTGTTTCG CCCTGGCGCT GTCGGCATTT
TATGAGTTGA TCGAGTGGTG GGTCGCGTTG GCAACGGGTG AAGATGCCGA GGCATTCCTG
GGGACCCAGG GCTATGTGTG GGACACCCAG TCTGACATGG GGATGGCGCT TATTGGCGCC
CTAGCGAGCG TGATGCTGCT TTCACGCTGG CATGACAGAC TGCTGCTTAA ACTGAAAAAG
CAATAA
|
|---|
| Protein sequence | MNKSTVWLTI FFAVLIWSGI EPKDSFTWFL EVAPALIALP ILFVTRKKFP LTSLAYGLIL
IHAIILMVGG HYTYAEVPLF DTIADWMGSE RNNYDKVGHF AQGFIPALLA REVFLRLEVV
KQGAWCNFLV CCFALALSAF YELIEWWVAL ATGEDAEAFL GTQGYVWDTQ SDMGMALIGA
LASVMLLSRW HDRLLLKLKK Q
|
|---|
| |