| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3154 |
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| Symbol | |
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| ID | 4921992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3755682 |
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| End bp | 3756656 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164764 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095279 |
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| Protein GI | 127514082 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA TGACTCTAGA TAGTTTAGAT ATGCTGAGCG CCAATATATT AGTTAATTTG
TATGAAAAGC ATTCCGCTTC GTCGGTGGCG ATGGAGATGA ATATACCCGC GCCCAAGGTG
AGTCGCTGTC TACAACACGC GCGGATGATC TTTAACGATC CCCTGTTCAT CCGTAAGAAA
CATGGCCTAG AACCCAACGA ATTTACCCGT CAACTCTATC CCCTGGTCAA GGCCCTGGTG
CAGTGTGGTG AACAGCTGCA TCAGCTGGAG AGCTGCCACG ATCTGGCCGC GAGCCAGATG
ATGGTGCTCT ATGTGAGTGA CCTCCTGATC GCCGAACTGC CCCAACGCCT GAGCGGCGCC
ATCAACGAGG CGCAGCTGCC TATCAGCTAT GAGCTGCGCA CCGGCTCTGT GGATCTGCAA
GAAGATCTGG CCCAGGGACT GATCGATCTG GCGATCGTCA GCGAGTCCTC GGACAAGGCG
CTGCAGGACG ACAGACTCAC CATCACGCCC CTCAAGCAGT TGACCCACCT GTATCTGCTC
TGCTCCCTCA AGCATCCCCT GTTGCAGCAG GAGATCAGCC TGGCCAACAT CGCCAACTAT
CCCTACCTGA GCGCCTTCGG TCAGCTGGAC AGGCAGGCGC CGGATCCTTT CCAGCGCTAC
TGCACTCAGC AGCGCCTAAG CTGTCATCTG GCACCTGTGG ATCTGGGACG TGAGGGGCTG
GAGTTTAATC AGCTGTATCG CTATCTATCC GACGACAAGA CGGTGAGCCT GCTGCCTTAC
AGCAGGGTGT ATGAGCATAG CGAGCTGCTA CCCGGCTTGC ATGTGTGCTG CCTGTCGGGC
ATGGATACCG CGCGCCTCTA TCAAGATCAG CCCTATCCTA GGCTCTACAT GTTGAGTCGT
AGCGGTCGCA GCGCCGCCCA TCTGGATTGG TTGAAGCAGG AGATAGGTCA GCTGATCAGT
CAGAACGTGC ACTAA
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| Protein sequence | MKNMTLDSLD MLSANILVNL YEKHSASSVA MEMNIPAPKV SRCLQHARMI FNDPLFIRKK
HGLEPNEFTR QLYPLVKALV QCGEQLHQLE SCHDLAASQM MVLYVSDLLI AELPQRLSGA
INEAQLPISY ELRTGSVDLQ EDLAQGLIDL AIVSESSDKA LQDDRLTITP LKQLTHLYLL
CSLKHPLLQQ EISLANIANY PYLSAFGQLD RQAPDPFQRY CTQQRLSCHL APVDLGREGL
EFNQLYRYLS DDKTVSLLPY SRVYEHSELL PGLHVCCLSG MDTARLYQDQ PYPRLYMLSR
SGRSAAHLDW LKQEIGQLIS QNVH
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