| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3129 |
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| Symbol | |
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| ID | 4922092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3721436 |
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| End bp | 3721879 |
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| Gene Length | 444 bp |
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| Protein Length | 147 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640164739 |
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| Product | TraR/DksA family transcriptional regulator |
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| Protein accession | YP_001095254 |
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| Protein GI | 127514057 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1734] DnaK suppressor protein |
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| TIGRFAM ID | [TIGR02420] RNA polymerase-binding protein DksA |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000056681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0353439 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTGAAG GCACTAAAAA ACTTGGCGTG CTCGCTATCG CAGGTGTAGA TCCTTACCAG
GAAAAACCGG GTGAGGAATA TATGAATACC GCTCAACTGG GTCACTTCAA AAAGATTCTC
GATGCTTGGC GTAGTCAGCT CCGTGAAGAA GTGGATCGCA CCCTGAATCA TATGCAAGAT
GAAGCGGCTA ACTTCCCAGA CCCTGTCGAC CGTGCGGCTC AGGAAGAGGA GTTCAGTCTT
GAACTACGCG CCCGTGACAG AGAGCGTAAG CTAATCAAGA AGATTGAAAA AACATTGCAG
AAGATCGAAG ACGACGATTT CGGTTTCTGT GATTCATGCG GTATCGAAAT CGGTATCCGC
CGTCTCGAAG CCCGTCCAAC GGCCGACCTG TGTATCGACT GTAAGACGCT CGCCGAGATC
AAAGAGAAAC AGATGGCCGG TTAA
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| Protein sequence | MPEGTKKLGV LAIAGVDPYQ EKPGEEYMNT AQLGHFKKIL DAWRSQLREE VDRTLNHMQD
EAANFPDPVD RAAQEEEFSL ELRARDRERK LIKKIEKTLQ KIEDDDFGFC DSCGIEIGIR
RLEARPTADL CIDCKTLAEI KEKQMAG
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