| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3128 |
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| Symbol | |
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| ID | 4922091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3720572 |
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| End bp | 3721276 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164738 |
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| Product | sugar fermentation stimulation protein A |
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| Protein accession | YP_001095253 |
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| Protein GI | 127514056 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1489] DNA-binding protein, stimulates sugar fermentation |
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| TIGRFAM ID | [TIGR00230] sugar fermentation stimulation protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000110927 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0371507 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTTTTA TCCCCCCATT CGAACAGGGA AAGTTACTCA GACGCTACAA GCGCTTCCTC
GCCGACGTAC TGCTAGATGA CGGCACTGAG ATCACCATCC ACTGCCCTAA CACGGGCTCG
ATGCGCAACT GCCTGTTTCC CGGCGAGCGG GTCTGGTTCT CTACCTCAGA TAATCCCAAG
CGCAAGTATG CCCACACCTG GGAACAGGCG GCCTCAGATG AGGGCCACAT CATAGGGATC
AACACTGGAA GGGCCAACGC CCTGGCGGCC GAGGCGATTG AGGCTGGGGT GATAAGCGAG
CTGACCGGCT ACGACCGCCT GCGCCGGGAG GTCAAATATG GCAGCGAGAA CAGCCGTATC
GATCTGCTGC TCGAGAGCGA GGATAAACCT GCCTGCTATA TAGAAGTCAA AAGTTGTACC
TTATTAGAGC AGGGCCAGGG ATACTTCCCC GATGCGGTGA CTACACGAGG CCAGAAACAC
CTGCGCGAAC TGATGGAGAT GGTCAAGCAG GGACACAGGG CCGTGCTTTT ATTTGTGGTG
CAACATACTG GGATAACCAC TGTGGCAGCG GCCCGCCATA TCGACCCAGA GTACGCCGAA
CTGCTGACTC AGGCACACCA GGCCGGGGTG GAAATTCTCG CCTACAGCTG CGAACTCTCC
CCAAGCGCCG CCAAGCTGAT TAAATCCTGC CCTGTCAAGT TGTAA
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| Protein sequence | MIFIPPFEQG KLLRRYKRFL ADVLLDDGTE ITIHCPNTGS MRNCLFPGER VWFSTSDNPK
RKYAHTWEQA ASDEGHIIGI NTGRANALAA EAIEAGVISE LTGYDRLRRE VKYGSENSRI
DLLLESEDKP ACYIEVKSCT LLEQGQGYFP DAVTTRGQKH LRELMEMVKQ GHRAVLLFVV
QHTGITTVAA ARHIDPEYAE LLTQAHQAGV EILAYSCELS PSAAKLIKSC PVKL
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