| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3060 |
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| Symbol | |
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| ID | 4922660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3631146 |
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| End bp | 3633872 |
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| Gene Length | 2727 bp |
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| Protein Length | 908 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164670 |
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| Product | hypothetical protein |
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| Protein accession | YP_001095185 |
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| Protein GI | 127513988 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAAGGGA TTCTGAGCTA CTACAAACAG TGCTTTGCGC ACGACAGCGC CGAGATCAAC
CTCTGGTCGT GTCATAAGCT GGCCGAGCAA GATCAGCTGC TGCTACAGGG TGAAGATGAG
CTTGCCAGTG GCTTCCTCCC CCGTCTCCCC TTGCCCCACA CCTTAGCCTC GACGTTAATG
AACCGCAGCG CCCTCTATCT GCGTGAGCGG GTATTGCTGC ATTGCAGCCT GTTCTTTAGC
GGCACCTTAG AGCTCAATGG CGAGAGGCGT AAGGTGGTTA CACCGCTGCT CTATCGCGAG
TGCCAGATAC AGGCCGATGG CGATGAGATC TTTCTGCAGG CCAGCGAGTC ATTAACCGGC
CAAAACCCAT TTACCATCAA CGAGGCGCTA CTGGAAAAAC TCGTGGTGGA AGGCCATAGC
CTGACCCAGG ATCTGCGCGA TAACCCCACC GACGTGAGCG GCTGGATAGC CTGGCTGCGC
GCCGGACAAG CCGATGTGGA TGCCACCCAG CTACTGCATT TTCCCAAGCT GATTGATGAA
GAGGTATTTG AAGGCTTAAG GCGCAAACGC AAAGGCTTTC TGGTAAGTCG CAGCCAGCTG
GTGCTGGCCG AGCGATCCCT GGCCAGTCGC GGCATACTGC ATGAACTCGA CCTATTGATG
GCGACACCAG ATCTTTCCCC GCCGCTACAG GCCCTGTTTG CCGAGCAACA GCCATCGCCC
CAAAGCAAAC GACAGGTCAC AACCCAGCAA GATTGCCTGC CGGGACTGCT GAGTAATGCC
CAGATGCAGG CGCTGAATAT CGCCGCCAAC CACACCCTAG GGCAGATCTC AGGCCCACCC
GGCACGGGCA AAAGCTACAC CATAGCCACC ATAGCTGCCG AGCAGATATT GCGCGGCAAG
TCGGTGCTGA TCGCCGCCCA CACAGATGTT GCCGTGGACG TGATAGCCGA TAAGTTGCAG
CAACAGTTTC AGCTGGGCAG CAGCCTGATC CGCGCCGGTT CGCCGCAATT TATCAAGCAG
CTCAAGTCCC AGGTGGACGA CATGCTCAAC GGCATTCATC CCGTCGCCAA CAAGAAGGTA
ACTGACATCG CGCTGCAGAA GGCCTACAAG CAGCTCGAAA TAGTGACCAG ACAGCAAGCC
AAGCTGGAAC AGAGCTTTAC CCGCCATTGC AAACGCGCCA TAGGTCGCGG CCAGAAGCTG
GCGAGGCTCG AGCAGCAAAA ATCCCGCTGG CGCCTGCCCT GCTATAACTG GTTCTATCGC
GGCGGCATTA GGCGCTTCTC CCGCCAGTGG GAGGTGCTCG ACAGCTTAAA TGGCCTGATA
GCGCAGAAAG AGAAACTCAG CCTTGAGTAT CTACAGCTGG CCACAAGCCA CAGACAAAGC
CGCCTGCTGC AAAACAAGCG CAGCTCCCTG GTTAACTTTG CCAAGGCGAT ACGGGCGCGT
CAGTCGGCGA AACAGCTGGA GGCCTTCTAC AACACGGACT TCTCGGCGCT GCAGCAGACC
TTTCCCATCT GGTTATCCAG CCTCGCCAAC CTGCACAGGG TAATGCCCCT GCAGCAGGAG
ATGTTCGATC TGGTGATCAT CGACGAGGCC ACCCAGGCCA ATATTGCCGA GTGTCTGCCC
GCCCTGCAGC GCGCCAAGGC GGCGCTTGTG GTGGGCGACA GCAAACAGCT GAGACACTTC
TCATTTCTGT CTCGCGAGAA ACAAGCCAGC ATTCAAACCC AGCTCGGTAT AGCACCGGAC
AGACGCGGAC TGCTGAGCTA TCGCGATGCC AGCATGCTCG ACCTAGTATC TGGCTCGTTG
AGCGGCCAGG CCCAGGTTGC CTTTCTGGAC GAGCACTTTC GCAGCAAGCC AGAGCTTATC
CAGTTCAGTA ATCAGGCCTT CTATCAAAAT GCCCTCAAGG TGATGCAGCA CAGGCCCTGC
ACCAGCTCGG GACACTTGCA CAGAATTCAG GTTGATGGGA TGCGCGACGC CAAGGGAGTA
AACCTCCTCG AGGCCGAGGC CTTGATGGAC AAGCTAGCCA AGCTTATCGA GGAACAGGCC
GATGCCTTGG TGCCCTCTAG CATCGGGGTG CTCTCCTGTT TTCGACATCA GACAGAGTAT
CTGTCGAAGC AGATCATAGC CCGGTTCAGC CTGGCACAGA TAGAACGTCA TCAGCTGCGG
ATCGCCACGC CTTTTGGCTT TCAAGGCGAG GAACGCGACA TCATGCTGCT CTCCTTCAGC
GTGACTGCAC AAGACAGTCG CGCCGCGGCC TACCTTAACC GCGCCGATAT GTTTAACGTG
GCTATCACCC GCGCCAAACA GGCCCAGTGG CTATTTTTGT CATTGGATGA AACGGCGCTG
CCTAACAATA ATCTGCTGGC CAAATACCTC ACCTCGGCGA CCCAGTTTGA GGCCAAACAC
AACTATGTCG ATGCGTTAGA TGAGTTTGGT CAGTCGGTGA CCCAGGCGCT GGAGGCAAAA
GGCATCACAG TGTGGCGTGC CTACCATATG GCGGGGCTGG AGCTGGATAT CCTCTGCCGT
TACGGCGACC AGTATCTGGC GATAGACTTA ATCGGCTATC CCGGCCCCTG GGAGGACTTC
TTCGAGGTTA ACCTCTACAA GCTACTGCAG CGCGCCGGCG TCAGCCTGAT GCCGCTAAGC
TACGGCCTGT GGAGCCAACA GCAAGCCCTG TGTATCGACC ACATCTGTAA GCAGTTCGGT
ATAGCGCCAA CCCAAGAGGT CGCTTGA
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| Protein sequence | MQGILSYYKQ CFAHDSAEIN LWSCHKLAEQ DQLLLQGEDE LASGFLPRLP LPHTLASTLM
NRSALYLRER VLLHCSLFFS GTLELNGERR KVVTPLLYRE CQIQADGDEI FLQASESLTG
QNPFTINEAL LEKLVVEGHS LTQDLRDNPT DVSGWIAWLR AGQADVDATQ LLHFPKLIDE
EVFEGLRRKR KGFLVSRSQL VLAERSLASR GILHELDLLM ATPDLSPPLQ ALFAEQQPSP
QSKRQVTTQQ DCLPGLLSNA QMQALNIAAN HTLGQISGPP GTGKSYTIAT IAAEQILRGK
SVLIAAHTDV AVDVIADKLQ QQFQLGSSLI RAGSPQFIKQ LKSQVDDMLN GIHPVANKKV
TDIALQKAYK QLEIVTRQQA KLEQSFTRHC KRAIGRGQKL ARLEQQKSRW RLPCYNWFYR
GGIRRFSRQW EVLDSLNGLI AQKEKLSLEY LQLATSHRQS RLLQNKRSSL VNFAKAIRAR
QSAKQLEAFY NTDFSALQQT FPIWLSSLAN LHRVMPLQQE MFDLVIIDEA TQANIAECLP
ALQRAKAALV VGDSKQLRHF SFLSREKQAS IQTQLGIAPD RRGLLSYRDA SMLDLVSGSL
SGQAQVAFLD EHFRSKPELI QFSNQAFYQN ALKVMQHRPC TSSGHLHRIQ VDGMRDAKGV
NLLEAEALMD KLAKLIEEQA DALVPSSIGV LSCFRHQTEY LSKQIIARFS LAQIERHQLR
IATPFGFQGE ERDIMLLSFS VTAQDSRAAA YLNRADMFNV AITRAKQAQW LFLSLDETAL
PNNNLLAKYL TSATQFEAKH NYVDALDEFG QSVTQALEAK GITVWRAYHM AGLELDILCR
YGDQYLAIDL IGYPGPWEDF FEVNLYKLLQ RAGVSLMPLS YGLWSQQQAL CIDHICKQFG
IAPTQEVA
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