| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2986 |
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| Symbol | |
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| ID | 4923787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3543846 |
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| End bp | 3546125 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164596 |
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| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
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| Protein accession | YP_001095111 |
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| Protein GI | 127513914 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
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| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACTC TAGATATCGC TTCATTAGGC TTTCCCCGCA TAGGTCGTCA ACGGGAACTC
AAATTTGCCC TGGAAAAATA TTGGCGTGGT GAGATAGAGC AGACGCAGCT GCAATCGCTC
GCCAGCGAGC TGCGCAGAAC TCATTGGCAG TGGCAGCAGG CGGCGGGGGT GAAGCAAGTG
CCGGTTGGTG ACTTTGCCTT CTACGATCAG GTGCTGACCC TGAGCGCTAC CATCAATGCC
ATCCCGGCGC GCCATCGCAG CGGCGAGCAG GTGGATCTCG ATACCCTGTT TCGAGTGGCC
CGTGGCCGCG CCCCCACGGG GGAGGCGAGC CGCGCCGCCC AGATGAAGAA ATACTTCAAC
ACCAACTATC ACTACATAGT GCCTGAGCTC ACGGCGGGTC AGCGCTTCGA GATAGCCTAT
GAGCAGCTGT TCGACGAGGT GGCCGAGGCT AAATCCCTGG GGCATCAGCC TAAGCCGGTA
TTGCTTGGCC CGGTCAGCTA CCTCTATCTT GCCAAGTGCG AGGGCGAGCC CTTCGACAAG
CTGAGCCTGC TGCCCAACTT GCTCGAGGCC TACCAAGCAA TTCTGGCGCG ATTTGCCGAT
CAAGGCGTGA CCTGGGTGCA GCTCGACGAG CCTATCTTGG CGCTGGAGCT AGATGATGAC
TGGCTGGCGG CCTTCGAGCC GGCATACAAA GAACTCAGTG GCCAGGGGGT TAAGCTGCTG
CTAGCCAGTT ACTATGGCTC TGTGGCCCAT CATCATGAGT TGATTAAGGA TCTCGTAGTC
GATGGCCTGC ATCTGGATCT GGTGAGCGAT GCCGAGCAGC TCACCCTGTT TGGCGCCAGC
TTGAAGCCGA CGCAGGTGCT CAGCCTTGGG GTAATCAACG GTCGCAACGT GTGGGCGGCG
GATCTCGACA TCTTGGCCGA GCGTCTGCGT GGCCTGGTGG CGGATCTTGG TGAGCGTGTC
TGGCTGGCGC CTTCCTGTTC GCTTCTGCAT GTGCCCGTGG ATCTGGAGAG CGAAACCGAG
CTGGCGCCAG AGCTTGCCAA TCAACTCAGC TTTGCCAAGC AGAAACTCGA CGAGCTGGCG
GCGCTGCGCA CCTTGTTGCT TACCCCACAG AGCGAGGCAG CCCAGGCGAT AGTGGCGCGC
TGTGAGGCGA GGCGTCAGGT CCGTGAACAG GCGGCCAACC CTGAGGTGCA GGCGAGACTC
AAGGCCCTAA CGCCTGAGGA TTTCAATCGT CCTAGCGGTT TTGGCGAGCG CCGCCTAAAG
CAACAGGCCC GTTTTCGTCT GCCGCTGCTG CCAACAACTA CCATCGGCTC CTTCCCGCAG
ACGCCGGCCA TTCGCGGCCT GCGCAGTCGC TGGCGCAAGG GCGAACTGAC CGAACAGGCC
TATGTGGCGC AACTCGAGGC GGTAACCCGC GACAGCATAG CGCGTCAGCT CAAGTTGGGG
ATCGACGTCC TGGTCCATGG CGAGGCCGAG CGCAACGACA TGGTGGAGTA TTTCGGCGAG
CAGCTCGACG GGGTAGGCTT TACTCAGTTT GCCTGGGTGC AGAGCTACGG CTCACGCTGC
GTCAAGCCGC CGCTCATCTA TGGCGATGTA TCACGTCGTC AGCCGATGAC GCTTGCCTGG
GCAAGCTTCG CCCAGGGCCT GACCGACAGG CCGGTGAAGG GGATGTTGAC CGGCCCGGTG
ACCATACTGC ATTGGTCCTT CGCCCGGGAA GATATCGGCC GCGAGCAGAT AGCCAATCAA
CTTGCCCTGG CGATCCGCGA CGAGGTAGCC GACTTGCAGG CGGCGGGGAT CGGCATCATA
CAGATAGATG AACCGGCGTT TCGTGAAGGC CTGCCACTGA AGGCCAGTGA CTGGAAGCAT
TACCTCGACT GGGCGGTGGC CGCCTTTAAA CTCAGTGCGG CGGGCGCCGA GGATGAGACC
CAGATCCACA CCCATATGTG CTACAGCGAA TTCAACGCCA CCATAGATGC CATCGCCGCC
ATGGACGCCG ATGTGATCAC CATAGAGACC TCGCGCTCGC ACATGGAGCT GCTCAATGCC
TTCGAGGATT TCGAGTATCC CAACGAGATA GGCCCGGGGG TGTATGACAT CCACAGCCCG
AATATTCCGA CAGTGGAGCA GATGGTGGCA TTGATTGAGA AGGCGGCGAC CAAGATCCCT
GTGGGACAGC TGTGGGTGAA CCCTGACTGT GGGCTGAAGA CGCGCACCTG GGATGAGGTG
GAGCCTGCGC TGCAAAATAT GGTGAAGGCG ACCAAGGAGC TAAGACGCCG CCTGGGTTAG
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| Protein sequence | MQTLDIASLG FPRIGRQREL KFALEKYWRG EIEQTQLQSL ASELRRTHWQ WQQAAGVKQV
PVGDFAFYDQ VLTLSATINA IPARHRSGEQ VDLDTLFRVA RGRAPTGEAS RAAQMKKYFN
TNYHYIVPEL TAGQRFEIAY EQLFDEVAEA KSLGHQPKPV LLGPVSYLYL AKCEGEPFDK
LSLLPNLLEA YQAILARFAD QGVTWVQLDE PILALELDDD WLAAFEPAYK ELSGQGVKLL
LASYYGSVAH HHELIKDLVV DGLHLDLVSD AEQLTLFGAS LKPTQVLSLG VINGRNVWAA
DLDILAERLR GLVADLGERV WLAPSCSLLH VPVDLESETE LAPELANQLS FAKQKLDELA
ALRTLLLTPQ SEAAQAIVAR CEARRQVREQ AANPEVQARL KALTPEDFNR PSGFGERRLK
QQARFRLPLL PTTTIGSFPQ TPAIRGLRSR WRKGELTEQA YVAQLEAVTR DSIARQLKLG
IDVLVHGEAE RNDMVEYFGE QLDGVGFTQF AWVQSYGSRC VKPPLIYGDV SRRQPMTLAW
ASFAQGLTDR PVKGMLTGPV TILHWSFARE DIGREQIANQ LALAIRDEVA DLQAAGIGII
QIDEPAFREG LPLKASDWKH YLDWAVAAFK LSAAGAEDET QIHTHMCYSE FNATIDAIAA
MDADVITIET SRSHMELLNA FEDFEYPNEI GPGVYDIHSP NIPTVEQMVA LIEKAATKIP
VGQLWVNPDC GLKTRTWDEV EPALQNMVKA TKELRRRLG
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