| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2978 |
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| Symbol | |
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| ID | 4923819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3532681 |
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| End bp | 3533427 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164588 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001095103 |
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| Protein GI | 127513906 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTGC TCTTGTCATC CCGGCCTGTC GGGGCGGCAT CGTTGCGCAT GCTCACCGAA
GAGTGGGCGC CCATGAGCTA TCAGGAGCAG GGGCTTCCCA TGGGCTATGG CGTCAGCCTG
GTGCAGCGTC TTGCCAAGGA GCTCGGTGAG GAGGCCAATA TCGAGGTGCT GCCCTGGGCC
CGCGCCTTTG CCATCGCAGA GGGTCAGGCC AACGTGCTGC TGTTTGCCAC CTCCCTTAAC
GAGCAGCGCA GCAGGGATTT CGATTTCGTC GGTCCCATAG CCACCACAAG TATCTCTATC
TATGCCAAGG CCGATGACAG GGTGAACCCC GCCTCGGTGG CCGAGCTGGA CGCTCTGGGC
AGCGTCGGCG TCTATCGCGG CTCTCTGGGA GAATCTATCC TGACCCGTCA AGGAGTCGAG
CACCTGACGG TGGCCAGCTT TCCACAGCAG TCGGCGCGCC AGCTACAACA TGACAGGATA
CGTTTCTGGT GTCAGGCGGA TCTGGCGGTG GAGCGTCTGT TGGCCGAGGT GAATATGGGG
CTGGATGAGG TGCATCCCGT ACTGGAACTG GCGCAGATAG ACCTCTACCT GGCCTTCTCA
AAGGGGACCG ACCCTGAGCG GGTGAGTCGC TGGCATGAGG CTTTGGTTAA GTTACAAGCC
TCAGGAGAGA TGGCCCGCCT CTATCATGCT TGGTTTCCCA AGCTAAATCC CCCGAGCCGT
ATCGAGCTGC TTAAACACGG CGACTAA
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| Protein sequence | MSLLLSSRPV GAASLRMLTE EWAPMSYQEQ GLPMGYGVSL VQRLAKELGE EANIEVLPWA
RAFAIAEGQA NVLLFATSLN EQRSRDFDFV GPIATTSISI YAKADDRVNP ASVAELDALG
SVGVYRGSLG ESILTRQGVE HLTVASFPQQ SARQLQHDRI RFWCQADLAV ERLLAEVNMG
LDEVHPVLEL AQIDLYLAFS KGTDPERVSR WHEALVKLQA SGEMARLYHA WFPKLNPPSR
IELLKHGD
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