| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2953 |
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| Symbol | |
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| ID | 4924090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3499682 |
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| End bp | 3501262 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164563 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001095078 |
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| Protein GI | 127513881 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.216564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTAA ATCACTTCCT AAATATTTTA GCCCTAGGGC TCTTGCTGCT GTCATTTCTG
ACCGCAAGCG GCATCTATTA CCTCATCTAC CTGCCAAGAA TTGAAGAGCA AGTGATCTCA
AGGCAAGACA GAGATCTGCA GGCGGTTCAA AAGGGGATCG CCTATGCCCA AAAAAACCTG
GATACCCTCT GCTACGACTA CGCCATCTGG GATGATATGG TGAGCTTTGT CGATAATGTA
TCGCCTGAGT TTGTGACCAA GAATTTGTTT GATAACGCCT TTGAGGCGGC CAATGTCGAT
GGTTTCTATG TGTTTAACCG CCAAAATCAG CTGGTGTGGC AATATCGAAG TGGCGCTGAT
TTTGACTCGC AGCAGCTGCC CTTAGGCAAG GTTGGTGTGG CAGGCAAGCT TCTCCCCTCA
AAGGTGGAGG TGGATACAGG GAAGCCTTCG GTGCGCAGCG GTCTGCTGCG CATGGGATCT
AGGGTGGTCT ATTTCAGCAA TGTCACCGTC TTGCCCAGTA ACGGCGAGGG AGAGGTGGCG
GGTAGCTTGC TGACAGTACG TAACGTAAGT CAGGCGATTC ATGAGGAGAT AGAGCAGTTT
AGCCTGATCA AGTTTGACCT CGAGGTGCTG GCTAAACCTG AGCTTGCCGG TGAGACCTCG
CTGGGTTTTA GAGAGACACC TAAGGTGGAT GAGATCTCCG CGGAGCATTC TTGGTTCCTG
CATGATGCGC TCAACGTGCC TTCCCTCAAG ATCACTGTGA TCCACGACCG GAATCTTATC
CCCTCTATCT TTACCGTAGA GTCAATCCTG ATGTTTTTAA GCGTCCTGGT GATGTCCTAC
ATCGCCATCG TTCCCTTCTC GGCGCTGGTG GTCCGGCCGC TGCGGGTCGC CAACGCAGTA
CTGGATAAGA TGGCCCACAG AGGTGTGTTA CTCACCATGC CTACGGGTTG GGCGATCACC
GAGGTGGCCA AGCTGACCGA GTCTTTCAAT CTGGTGGTGG AGAAGCTGGA GCGGCATCAA
AACTATCTGG AATCTCTCTC TTTTAACGAC CCCCTCACTG GCATCGCCAA TCGCCGCAGC
CTGGAGGTGT TCGCCGAGCG TGCTCATAAA CAGTGGCGCG AGGGCAAGGG GGCGATTGGC
TTCATCATGC TGGATATCGA TTTCTTCAAG CCCTATAACG ACACGGTCGG GCATCAGAGT
GGCGACCAGG CCCTGATCAA GGTGGCCCAG GCCCTGATGC TTGAGTGTCG TCGCCGTGGC
GAGCTAGTTA CCCGTTATGG CGGCGAAGAG TTTTGTGTGG TGATCCACGG CGATAACCTG
GCGCAGATGG AACTGCTGGC CAGGCGCATG CTGCAAAGGG TGCGGGATCT CAACATCTAT
CATCAAGCCT CGCCCTACGA GATCATCACC GTCAGCATGG GCGCCGTCCT CTATGACGGC
TATCATCCCG AGTTTGCCGA TGACGACTGG CAGCATATGG TCAAGTTGGC CGACGAGCAG
CTCTATCAGG CAAAAGAGAG CGGGCGAAAT AACCTGCAGA TACTGCATCG CAAGGTGAGC
CCGCTCTTCG TGGTTGGCTG A
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| Protein sequence | MRLNHFLNIL ALGLLLLSFL TASGIYYLIY LPRIEEQVIS RQDRDLQAVQ KGIAYAQKNL
DTLCYDYAIW DDMVSFVDNV SPEFVTKNLF DNAFEAANVD GFYVFNRQNQ LVWQYRSGAD
FDSQQLPLGK VGVAGKLLPS KVEVDTGKPS VRSGLLRMGS RVVYFSNVTV LPSNGEGEVA
GSLLTVRNVS QAIHEEIEQF SLIKFDLEVL AKPELAGETS LGFRETPKVD EISAEHSWFL
HDALNVPSLK ITVIHDRNLI PSIFTVESIL MFLSVLVMSY IAIVPFSALV VRPLRVANAV
LDKMAHRGVL LTMPTGWAIT EVAKLTESFN LVVEKLERHQ NYLESLSFND PLTGIANRRS
LEVFAERAHK QWREGKGAIG FIMLDIDFFK PYNDTVGHQS GDQALIKVAQ ALMLECRRRG
ELVTRYGGEE FCVVIHGDNL AQMELLARRM LQRVRDLNIY HQASPYEIIT VSMGAVLYDG
YHPEFADDDW QHMVKLADEQ LYQAKESGRN NLQILHRKVS PLFVVG
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