| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2870 |
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| Symbol | |
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| ID | 4921842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3408585 |
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| End bp | 3411158 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164467 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001094995 |
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| Protein GI | 127513798 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGAAA AATACATTAA ACCCAATCAC TTATTACGCT CCCGAGCAGC AGTAAGTCGG
AGCAACATGA AGCTAAGTTG TTTGGCCATG GCGGTTTTTG GGGCTATTTC AGGTCAAGTT
TTTGCAGAGG AAGCGCAGGC GCCAGAAGAA GCGAAAGAGC AGAAGGCGAG CGCGTTCGAA
GTCATCGAGG TGACGGCGCA AAAACGTGTG CAACGTATGC AAGATGTCGG CATCGCGATC
TCCGCGTTTA AAGCCGATGA GCTGGAAGAT CTCGGTGCCT ATCAGGCGTC GGCTCTGGCG
GAATTTATCC CTAACATGGA GGTCGCCGTC TCAGACGATA GCGGCATCCC TATCTTCGTG
ATCCGTGGTG TGGGTCTACA GGACTACAAC ACCAACAACA CGCCTAATAC GGCCGTGGTC
GTCGACGACG TTTATCAGCC CTATGGCATC TATAGCGCCT TTGCCATGTT CGATACCGAT
AGGGTAGAGG TGCTCAAGGG GCCTCAGGGC GGTCTGTACG GACGCAACTC TACCGGCGGC
GCCATCTCTT TCTCCTCCAA GCGACCAGAG CTGGAGACCA CTGAAGCCAA TGTGGCGGTG
GATTACGGTA ACTATAATTC GCTCAACATC CGCGCCGGTG CCAGCCTGCC GCTGGGCGAG
GTTGCCGCTG TGCGCCTCGC CGTGCAGTCA GAGACCAGCG ACGGCTACTA CTACAACACC
TATCTGAATC GCGATCAGGG TGGCAAAGAT AAGCAGCAGG CACGCTTTAC CCTGCACTAT
GAGCCAGCCG ACTATTTTGC GGCAGATCTC AGATATACCT ATGGCCGTGA CACCTCAGAG
GCATCGATCC CCGAGGTCAC GGGCTTGCTG GACAGCAACG CCTACTGGGA GGGACCGCTG
GCGGGCTTCC CTGGGCTGCC GTCGATGAAT ATTCCCTACA ACCAGGATGG TACACCGGCC
TATTGTGACG CAGTGCTGCA AACCGGTATC CCGGATGCCA GCTGTATCAA CATGAACCGC
GCCAGCGCCG ATGGCGACCC ATACAGCGGC GCCGATGCCA GGGTGCATCC TAACGATGAT
ACCTACCATT CAGTGTCGCT AAACATGAAC TGGGATTTTT CCGACTACTC GCTGATCTCT
ATCACCAACT ACACCCAGAT GCAGTTTAAG CATCGTAACG GTGTCGGTTC GGTGGGTCTT
GGCCCTGGTC AGGATCAAGA GGCCTGGGAG CAAGCCAGTC GCGATTATGG TCGCCTCAAT
GGTGGTGACC TCAACGAGAT GTATGTCACC CAGTATGACT CAGACACCAG CTCATGGAGC
CAGGAGCTGC GCTTGCTGTC CAACTATGGT GGCGACTTCA ACTGGATGGT GGGTCTGGTG
TATGCAGAAG ATAACCTGGA CGACCTGAGA AACTGCTCCT TTGCCGCCAA CGTCTACGCC
GACTGGAAGC AGTTCCCGGG CTGCGGCACC ATGGCCTATA CCCAGGATAC CGAGGTGATT
TCAGGCTATG CCCAGCTCAC TTATGCCATC AGCGACACCC TGTCGACTAC GGTGGACCTG
CGTTACACCC AGGAGAAGAA GGACTATGTC GGCGACGTGT TTGTCAACGA CGGTACCTGG
ATCTGTACGG CTAATGGCCT TAACACCACA GATCCAGACA GTCCGACCTA CTGCGCCAAC
TTCATTGGTT GGGACCCTGT TACCGGCCGC TACGATCTGG CGCGAGGCAA CAAATCTCAC
TATGACGAGA GCGACCCGTC GTGGAAGGTT AACCTCGACT GGAAGGTCAC CCCGGATACC
CTCTTGTATG CCAGTGTGGG CAGCAGCTTT AAGTCCGGCG GCTTCTTCGG TGGCTTCCTG
ACCAACCCTA ATGCTATCCG TCCCTACAAG CCGGAGCGCA ACAACGGGGT GGAACTGGGC
TTCAAGTCGA CCCTAGAAGA TTATCGCGTG CAGATCAACG GCGCGGCCTT CTATTACGAC
TACCGCGACT TCCAGTCGGC TATCCAGGAG GTTGACCAGT CAACCGGCGG CGTCTTCAAC
GGCCTGCGTA ACCTGGGTGA CGTCATCATG CAGGGCGCCG AATTGGATCT GCGCTGGATG
GCGACTGAGG ACTTCGAGAT CCGCGCCGCT ATCGGCCTGC TCGACACCGA AGTCGACAAG
GTCACCAAGT TCGAGTCTGC CGATGTCGGT ATCACCAACA TCTTCGGTGA AGTGATCGAT
ATTCAGGGTA ACGAACTCAA CAACGCGCCT AAGTTCAGCG GCAACCTGAT CGCCCGTTAT
CACTATCAGC TCAGCGCCGA GCTGGAAGGC TTCATTCAGT TGGATGCCTC CTTCAAGGAT
GATTACTGGC TGTCTGTGTC TAACGAACCC ATCTATCGCG AGAAGGGTTA CACCCTGGTC
AATATGCGAG CGGAGATCTT CAGCCCAGCC GATAACTGGA GTGTGGCTGT CTGGGGACGC
AACCTGACCG ACAAGACCTA TCGCAACAGC TTCTATCTGG ATGGTTTGGA CAGTGGCTAT
AGCGAATATA ACGCGCCGCG CACCTTTGGT GTGAGCCTGT CTTACAACTA CTAG
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| Protein sequence | MMEKYIKPNH LLRSRAAVSR SNMKLSCLAM AVFGAISGQV FAEEAQAPEE AKEQKASAFE
VIEVTAQKRV QRMQDVGIAI SAFKADELED LGAYQASALA EFIPNMEVAV SDDSGIPIFV
IRGVGLQDYN TNNTPNTAVV VDDVYQPYGI YSAFAMFDTD RVEVLKGPQG GLYGRNSTGG
AISFSSKRPE LETTEANVAV DYGNYNSLNI RAGASLPLGE VAAVRLAVQS ETSDGYYYNT
YLNRDQGGKD KQQARFTLHY EPADYFAADL RYTYGRDTSE ASIPEVTGLL DSNAYWEGPL
AGFPGLPSMN IPYNQDGTPA YCDAVLQTGI PDASCINMNR ASADGDPYSG ADARVHPNDD
TYHSVSLNMN WDFSDYSLIS ITNYTQMQFK HRNGVGSVGL GPGQDQEAWE QASRDYGRLN
GGDLNEMYVT QYDSDTSSWS QELRLLSNYG GDFNWMVGLV YAEDNLDDLR NCSFAANVYA
DWKQFPGCGT MAYTQDTEVI SGYAQLTYAI SDTLSTTVDL RYTQEKKDYV GDVFVNDGTW
ICTANGLNTT DPDSPTYCAN FIGWDPVTGR YDLARGNKSH YDESDPSWKV NLDWKVTPDT
LLYASVGSSF KSGGFFGGFL TNPNAIRPYK PERNNGVELG FKSTLEDYRV QINGAAFYYD
YRDFQSAIQE VDQSTGGVFN GLRNLGDVIM QGAELDLRWM ATEDFEIRAA IGLLDTEVDK
VTKFESADVG ITNIFGEVID IQGNELNNAP KFSGNLIARY HYQLSAELEG FIQLDASFKD
DYWLSVSNEP IYREKGYTLV NMRAEIFSPA DNWSVAVWGR NLTDKTYRNS FYLDGLDSGY
SEYNAPRTFG VSLSYNY
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