| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2828 |
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| Symbol | nusA |
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| ID | 4922335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3352808 |
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| End bp | 3354307 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164423 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_001094953 |
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| Protein GI | 127513756 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00193559 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00416619 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACAAAG AGATTCTGCT AGTCGCTGAG GCGGTTTCAA ATGAGAAGGC CGTGCCACGC
GAAAAGATTT TTGAAGCGTT GGAGATTGCG TTAGCGACGG CTACCAAGAA AAAATATGAA
GGCGATATCG AAGTTCGTGT CGCTATCGAT CGTAAGACAG GCGAGTACGA AACCTTCCGT
CGTTGGATGG TGGTTGAGGA TGAAGGTCAG GCGCTGGAAA ATCCTTTCCG CGAGATCACC
CTTGAAGCGG CCCGTTACGA AAACCCAGAG ATTCAAGTGG GCGAGTATAT CGAAGATGAG
ATCGAGTCAG TCGTCTTCGA CCGTATCACT ACTCAAACCG CTAAGCAGGT AATCGTACAG
AAGGTACGTG AAGCCGAGCG CGCTCAGATC GTCGACCAGT TCCTGGAAAA AGAAGGCGAG
CTGATCACGG GTGTGGTGAA GAAGAGCAAC CGCGAGAGCG TCGTTGTGGA TCTGGGTAAC
AACGCCGACG CCGTGCTGTT CAAAGAAGAT CTTATCTCAC GTGAGAGCTT CCGTCCTGGT
GACCGCGTTC GTGCGCTGCT CTACGCCGTA CGTCCAGAGG CGCGTGGTGC ACAGCTGTTC
CTGACCCGTA CCAAGCCAGA CATGCTGATC GAGCTGTTTC GCGTAGAAGT ACCGGAAATT
GCCGACGAGA TGATTGAGAT CATGGGCGCC GCTCGTGACC CAGGTTCTCG CGCTAAGATT
GCGGTCAAGT CTAATGACCG TCGCATCGAT CCTATCGGTG CTTGTGTGGG CATGCGCGGC
GCGCGTGTTC AGGCCGTGTC TAATGAGTTA GGCGGTGAGC GCGTTGATAT TGTGCTTTGG
GATGATAACC CAGCGCAATT TGTGATCAAT GCGATGGCGC CGGCCGATGT GGCTTCTATC
ATAGTCGACG AAGATAACCA TTCTATGGAT ATCGCCGTTG AAGCAGACTC ATTGGCGCAA
GCTATTGGCC GTAACGGTCA AAACGTACGT TTGGCGACTC AGTTATCGGG CTGGGAACTA
AACGTGATGA CAGTGGAAGA TATGCAGGCT AAGCATCAGG CGGAAAGCGC CAAGATCGTT
AACCTGTTCG TCTCTGCACT GGATGTCGAT GAAGATTTTG CTCAAGTACT GGCAGATGAA
GGTTTCACCT CACTTGAAGA AGTTGCCTAC GTACCTGAGT CAGAGTTGCT TGAAATCGAC
GGCTTCGACG AGGAGATCGT TGAGGCACTC AGAGAACGCG CTAAGGCTGC GATCTCTACA
CGGGCTTTGG CATCCGAGGA AGCACTTGAC GGTGCTGAGC CAAGCGAAGA TTTACTTGCC
CTAGAAGGTT TAGAGCGTCA CTTGGCGTAT GTGTTGGCAA GTAAAGGCGT GATTACGCTT
GAAGATTTAG CCGAACAAGG CATTGATGAT TTGATCGAGA TTGAAGAATT AACAGAAGAA
AAGGCTGGTG AGCTCATCAT GGCGGCCCGC AACATCTGTT GGTTTGGCGA AGAAGCTTAA
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| Protein sequence | MNKEILLVAE AVSNEKAVPR EKIFEALEIA LATATKKKYE GDIEVRVAID RKTGEYETFR
RWMVVEDEGQ ALENPFREIT LEAARYENPE IQVGEYIEDE IESVVFDRIT TQTAKQVIVQ
KVREAERAQI VDQFLEKEGE LITGVVKKSN RESVVVDLGN NADAVLFKED LISRESFRPG
DRVRALLYAV RPEARGAQLF LTRTKPDMLI ELFRVEVPEI ADEMIEIMGA ARDPGSRAKI
AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DDNPAQFVIN AMAPADVASI
IVDEDNHSMD IAVEADSLAQ AIGRNGQNVR LATQLSGWEL NVMTVEDMQA KHQAESAKIV
NLFVSALDVD EDFAQVLADE GFTSLEEVAY VPESELLEID GFDEEIVEAL RERAKAAIST
RALASEEALD GAEPSEDLLA LEGLERHLAY VLASKGVITL EDLAEQGIDD LIEIEELTEE
KAGELIMAAR NICWFGEEA
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