| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2808 |
|---|
| Symbol | |
|---|
| ID | 4922542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3326705 |
|---|
| End bp | 3329095 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640164403 |
|---|
| Product | type IV pilus assembly PilZ |
|---|
| Protein accession | YP_001094933 |
|---|
| Protein GI | 127513736 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000659651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTAG AGCAACATAA GGCATTGATC GAACAGTTAA AACCCCTGCT GATGGAGACC
AACTTCCAGG AGCTGTTTGA ACATCTGACC TCGGGCGAGT CTAATTCGAC CCGTTTTCTG
CTCAAGATGG AGCTCAACCG CCTCTCCTCT CCCTGTACCC GGGTTATCGA TCTCAGGGAC
AGATCCGAAC TGCCCTGCGC CCCCTTTAGC AGCGGCGCCC AGACACACTT TATCGATACG
CCAGCGAAAG AGAACTTTAT TCAGGCCCTA GCCCTGTATC AGGGGCAGTA CACCCTTGGG
GTATACGAGC AGGTGATCGA GGGGCATAAG CTGCGCCGGC AAAGGGCGCG CGAAGGCGAC
CAAGGGGCCG ACACTGCCCT TACCCCCTTT GTGGCCAGCG GCGCCATCTT AGGCAGCTAT
TTCAATCGCG CCGAAGAGCG GATGAACTAT GCGATCCGCA TCGGCGTGCT GCAGCCGGGA
CGCAGCGAGG TAAAAGGGAT AACGGTCGAC CTCTCGGTCG GCGGCGCCCG CATTCGCCTA
CCTGTAGATC ACGGCCTCAA TCCTGAACAG CCGCTTATCG TCAAGCTGCT GGAGCTGAGC
GCCGAATACT ATTTCGATGA CCTGCAGAAA GGGGTGGAGT ATCAGGTGGT CGATGTCGAG
AGCAATCACG AGTTCAGCTG GATGCGTCTC AAGCGCGTCG GCGGCAGCGA CGCCCTGTCG
GACATGCTGG CCAACCTGAT CCAAGGCTAC AAGTTTCGCT ACAAGGTGGA TATCAACGAC
ATACTGGTCG CCGCCACAGG ACTGGGCTTC GAGCGTCACT ACCTGCCCCA TCTGCCGCAC
CTGCCGCTGT ATGTGGAGCT TAAGGATGGT CAGCATCGCA TCACCCACAA GCTGCTGAGC
CGCGACAATC AGAAGCTGCA ACAGTATTTT GTCGATGAGA AGTCGGTCAG CCAGCTTGGC
GGCATGTTGA CCCATGAGCG GTTACAGGCG CTGTTTAATG CGCCTCAAGA CCCGGATCAT
AACCTGTTTT TCTGTTTTAC CTTTCAGGCG CAAGGAGCGA TCTTCTTCTA TTCCGCCAGC
CTGGCCGAGC TAAAACAGAG CGATCTGCTC GGCCTCTTCC TGCGCTTTGG TGCTACTAAG
GCCAGTTGGC GCATCTTCAA GCTGGCCTGT CATGAGATAG ACCATGAGAT CTCCTATAAA
TCCAGTATCT TACCCGGTGA CTCCAGCTAT TACGCCTCGC TGACCGAGGC CCAGCTCAAG
TGCTTCACAC ATGTGCTGCA GCTGATCGAT CTCACCAACG AGGAGGTGCT GCCCCAATAT
GAGGCCTGGG ATGCCAAAGG CCATCAGGCC AACGAATTGA AACGTTTCGG CCAGGAAAAG
CTGCTGGAAG ATCAGATCAA GCTGTTGTCG CTGCAATTTA CCGAGCGACG TAACGAGGCA
CGCTTCTCCT TCAAGACCCT GGTCACCGTC AGCCAGGGCA AGCAGTCTCA CCACGGTTTC
ACCTTAGATA TCTCGGGCAA GGGGCTGCAG GTTACCCTAG ATGAGCCGGC CAACTTCGAT
ACCACGGCCC CTGTGATGGT CGCCTTTCCC AAGCTGCAAC ATCTGGCGGG TAAGACGCGT
CTGGCGCAGC TGCCCTATCG GCTGATCCGC ACCCGCAAGA ACGGCGTCAC CATACACCTG
GCCGCCATGG TCGGCCACAC GCCCCATGTC GGCGTCGCCT TCCTCAGCCG CCTCATCGAG
GCCAACCGTG ACAAGCTGAG AAAGCTGACC GAGGCCAACA GCGACATGAA GGAGCTCTCC
GACGGGCTGA AGAACCTGCT GATGCGTGAG CTGGCCTCCG TCCCCTACTT CATTGAGAAG
ACGGCAAAAT CGGCCAAACT CAGCGTATTA GGGGTGAGCA AACATTCCAA TGCCATCGCA
GATCTCTTCG CGGCGACCAC CCAGGAAGCA TTGAAATATG ACCTCAGTGC CCTGCTGGAT
AAGGGCCGCC TCAAAGAGGA TTTCATCACC CCTATCCGCC AGATGAAGCC GCAACACGGA
CTCGAGTTTT TCGAGACCTA TGTACAGATC TCCCGCCAGT CTCAGGGACG AATCAAGATA
AAATGCGTAC CGCCAAGGGA GATTGGCGAT CAACAGGCCC AGCTACACTT CATCAGACAG
AGCCAGAACC TGGGCCGTTT CATGGCGCTT CGCGTCTACC GAGGCGCCGC TGGTAAGCCG
GATATCAATT ATATCAAGCG CGAGCTGGAA TATATTGGCC TACATGCCCA GCACAAGGCC
AAGAAGCTGG AGCAGCTGAT GTGGCACATC ATAGGGGTTG GTGAGCTGCT GGATATCACG
GACGAGGTGA TGCTGCGCTA TCCAGAGCTG CTTGAGCCGC AAAAAGAGTA A
|
|---|
| Protein sequence | MSLEQHKALI EQLKPLLMET NFQELFEHLT SGESNSTRFL LKMELNRLSS PCTRVIDLRD
RSELPCAPFS SGAQTHFIDT PAKENFIQAL ALYQGQYTLG VYEQVIEGHK LRRQRAREGD
QGADTALTPF VASGAILGSY FNRAEERMNY AIRIGVLQPG RSEVKGITVD LSVGGARIRL
PVDHGLNPEQ PLIVKLLELS AEYYFDDLQK GVEYQVVDVE SNHEFSWMRL KRVGGSDALS
DMLANLIQGY KFRYKVDIND ILVAATGLGF ERHYLPHLPH LPLYVELKDG QHRITHKLLS
RDNQKLQQYF VDEKSVSQLG GMLTHERLQA LFNAPQDPDH NLFFCFTFQA QGAIFFYSAS
LAELKQSDLL GLFLRFGATK ASWRIFKLAC HEIDHEISYK SSILPGDSSY YASLTEAQLK
CFTHVLQLID LTNEEVLPQY EAWDAKGHQA NELKRFGQEK LLEDQIKLLS LQFTERRNEA
RFSFKTLVTV SQGKQSHHGF TLDISGKGLQ VTLDEPANFD TTAPVMVAFP KLQHLAGKTR
LAQLPYRLIR TRKNGVTIHL AAMVGHTPHV GVAFLSRLIE ANRDKLRKLT EANSDMKELS
DGLKNLLMRE LASVPYFIEK TAKSAKLSVL GVSKHSNAIA DLFAATTQEA LKYDLSALLD
KGRLKEDFIT PIRQMKPQHG LEFFETYVQI SRQSQGRIKI KCVPPREIGD QQAQLHFIRQ
SQNLGRFMAL RVYRGAAGKP DINYIKRELE YIGLHAQHKA KKLEQLMWHI IGVGELLDIT
DEVMLRYPEL LEPQKE
|
|---|
| |