| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2807 |
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| Symbol | |
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| ID | 4922541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3325002 |
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| End bp | 3326375 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164402 |
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| Product | DNA repair protein RadA |
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| Protein accession | YP_001094932 |
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| Protein GI | 127513735 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1066] Predicted ATP-dependent serine protease |
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| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000422719 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGAAGA ATAAAACAGC ATATGTGTGC AGCGAATGTG GTCAGGACTT TCCCCGCTGG
CAGGGGCAGT GTAATGCCTG CGGCGAGTGG AACACCATCT CTGAGGTGAG GCTGGCACCG
GCTAAGTCAA GTGCTGGCTC CGTGGCCGGT TATGCGGGGG CTGTCGGTGG CGGTTCCAAG
AAGCTTAGCG AGGTGGAGGA GTTCGAGGCC AAGAAGCTGC TTACCGGCAT TGGTGAGCTA
GACCGGGTGC TGTGCGGCGG GCTCACCACG GGCTCGGTCA ACATCATCTC GGGGGATCCC
GGCGCCGGTA AGACGACTAT TTTGTCGGAT CTGGTGTCGC GCATGTCTCA GCTGATGCCC
TCGCTCTACT GTACCGCCGA AGAGTCGCTG TCGCAGTTTA AGAACCGGGT CAATCGCCTC
AGGCTGGACT GCAACGAGGA AAACCTCTAC CTGATGGCCG AGACCAATGT GGAGGCGATC
ATCGCCGAGC TGGAGGCCAA GCAGGTCAAG TTTGCGGTGA TCGACTCAAT TCAGGCCGTG
GTGACGGACC TTGCCAACGG CAGTCCGGGT TCGCCATCCC AGGTCAAGGG CAGTGCCCAG
GCACTGACCC AATACTGTAA GCAGAACAAT GTCACCATGT TCTTGGTGGC CCACGTGAAC
AAGAACAACG AGACGGCAGG CCCGCAGACC CTGATCCATA TCGTCGATTG CCTGACGCAT
CTCGAGTGTA ACGACGGTCA AGTACGCACC CTGAGGGCCA ACAAGAACCG TTTCGGCGAC
GTAGATACCG TAGGCATCTT CAGGATGACC GAGCGGGGCA TGTTAAGCGT CGATAACCCC
AGCGAGATCT TCCTCTCGGG GTCGACTACC GAGTCTCCCG GGGCGGCCAT CACCTGTATC
CGCAAGGGCA ATCGTAACCT GTTGCTGGAG ATCCAGTGCC TGACCACTGA GGCTGAGGGG
GAGTTTCCCC AGCGAGTCTG TGTTGGCCTG AACATGAACC GAATCAAGAT GTTGACCGGG
ATCTTGCGCA AACATACCCG CACCAAGATC TATCACGACA CCTATTTCAA TCTGGTGGGC
GGGCTTAAGA TAGACGAGTC TGAGACTTGT ATCGACCTGG CGCTGGTGGC TGCGCTGCTG
AGCAGCCTCA ACGAGTTCGT GGTGCCGCGC ACCACCTGCA TCATGGGCGA GCTGAGTCTC
AACGGCGATG TGCGCCCCAT CGACAGCGGC GTGCCTAGGG TGAAGGAGGC GGTGCAGCAT
GGCTTTACCG AGATCTTCAT TCCGTTTCGC AATTATCATA AGTCGATGGA AGGTCTGGGC
GCCAAGATTA ACCCCATCAA GACGATACAC GAGCTACTGG AGTTGATCTG TTAA
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| Protein sequence | MAKNKTAYVC SECGQDFPRW QGQCNACGEW NTISEVRLAP AKSSAGSVAG YAGAVGGGSK
KLSEVEEFEA KKLLTGIGEL DRVLCGGLTT GSVNIISGDP GAGKTTILSD LVSRMSQLMP
SLYCTAEESL SQFKNRVNRL RLDCNEENLY LMAETNVEAI IAELEAKQVK FAVIDSIQAV
VTDLANGSPG SPSQVKGSAQ ALTQYCKQNN VTMFLVAHVN KNNETAGPQT LIHIVDCLTH
LECNDGQVRT LRANKNRFGD VDTVGIFRMT ERGMLSVDNP SEIFLSGSTT ESPGAAITCI
RKGNRNLLLE IQCLTTEAEG EFPQRVCVGL NMNRIKMLTG ILRKHTRTKI YHDTYFNLVG
GLKIDESETC IDLALVAALL SSLNEFVVPR TTCIMGELSL NGDVRPIDSG VPRVKEAVQH
GFTEIFIPFR NYHKSMEGLG AKINPIKTIH ELLELIC
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