| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2760 |
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| Symbol | |
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| ID | 4922755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3265570 |
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| End bp | 3266577 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164355 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_001094885 |
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| Protein GI | 127513688 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000146661 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.225413 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAAA GAACTATTAC CGTTATCCCG GGTGATGGGA TTGGCCCAAG CATAATCGAC
TCAGCAATCA AGATCTTAGA TAAAGCTGGA TGTGATTTCG AATACGAATT TGCAGATGCT
GGCCTAGCCG CACTTGAGAA GCAAGGTGAA CTTCTACCTC AACGTACATT GGATATGATC
GAGAAGAACC GTATCACGCT GAAAGGGCCA CTAACGACCC CTGTCGGCGA AGGTTTCACC
TCAATCAACG TCACTTTACG TAAAAAATTC GGCTTATATG CCAACGTACG CCCTGTATTG
TCTTTTAAAG GCACTCAGGC ACGTTATGAC AACATCGACA TCATCACGGT ACGTGAAAAC
ACCGAAGGCA TGTACTCAGG CCTAGGTCAA ACCGTTTCAG AAGATGGTGC GACGGCTGAA
GCCACCAGTA TCATTACCCG TCAGGGTGCC GAGCAGATCA CTACCTTCGC CTACGAGCTA
GCGCGCAAAG AAGGTCGTAA GAAGGTGACT ATCGTACACA AGGCTAACAT CATGAAGTCG
ACCTCCGGCC TGTTCCTGAA GGTAGCTCGT GAAGTAAGCC AGCGTTACCC AGACATCACC
ACTGAAGAGA TGATTGTCGA CGCGACCTGT ATGAAGCTGG TGATGAACCC AGAAAACTTC
GACGTGATCG TCACCACCAA CCTGTTCGGC GACATCCTAT CGGATCTGTG TGCCGGTCTG
GTGGGCGGCC TGGGTATGGC GCCTGGCGCC AACATCGGCA AGAACGCAGC GATCTTCGAA
GCGGTACACG GCAGCGCGCC AGATATCGCA GGTAAGAACC TGGCTAACCC AACTTCGGTG
ATCCTGGCAT CAATCCAGAT GCTGGAATAC CTGGGCATGT CAGACAAGGC GCAAGCCATT
CGCGCGGCGG TTTCTGCCGT GATCGAAGAA GGCGATCGCA CGACTCGCGA CCTTGGCGGT
ACTCACGGTA CCTCTGACTT CACTCAGGCG GTACTCGAGC GTCTGTAA
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| Protein sequence | MSKRTITVIP GDGIGPSIID SAIKILDKAG CDFEYEFADA GLAALEKQGE LLPQRTLDMI
EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVL SFKGTQARYD NIDIITVREN
TEGMYSGLGQ TVSEDGATAE ATSIITRQGA EQITTFAYEL ARKEGRKKVT IVHKANIMKS
TSGLFLKVAR EVSQRYPDIT TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGKNAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMSDKAQAI
RAAVSAVIEE GDRTTRDLGG THGTSDFTQA VLERL
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