| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2578 |
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| Symbol | |
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| ID | 4921066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3038648 |
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| End bp | 3039451 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164172 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001094703 |
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| Protein GI | 127513506 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACTATT TTGCCTACAA GACGCAGCTC CTTGCTGCCC TCCTCCTCTT TTTGAGCCTG
CCGGCGCTGG CGCAGCATAC CCCAGCGGCG CGCTGCGGTG TAGCCACAGG ATTCCCCCCC
TATCAGTTTT CCGCAGGCGG TGAGACCACA GGGTTTGATG CCGACGTGGC CAGGCTGATA
TTCAAGCGTC TTGGCATGCC GTTTCAGTTT CGGCAGCAGG CCTGGGATCT GGTGTTCAAC
GAACTCAGAT TCGGTGATAT CGAGCTGATC GCCGGCATGG AGATCAACGC CCTCAGGACC
AAGTTTTTCG ACTTCACCCG GCCTTATTAC TATCGATATG ACGTTATCTT CATTCTCGAA
GATAACCAGC AGATCACTAA GCTGGAAGAT CTTCATAACC AGTTTGTCAG CGGCGATCGC
CACTCTTACA TAGAGACCCA CTGGAAGGAG CTGGGCACAC TGTACGATTT TCGCATCATC
GCCACTCCGA GCAAGGAGAG GTCGATGCAG CTGTTAAAAG AGGGCAAGAT CCAGGCGGCC
ATCATGCCCA AGGCAGTCGG CCTCTACCTG GCGCAACAGA TGGGGATAGA AGTTAAGATA
CTGGACAACC CGGACCCGGG CTCGCCGGTG GCCTTTGCCG TCAAACGCGG CAATCATCAA
CTGCTAGTGC AGATCGACGA GGCGCTGGAG GCGCTGATCA GCGAAGGCGA GATCCAGCGC
CTCTATGAGA AGTGGTTCCC CGAACATCCC CAGCGCCATG ACGAGAAAGC CGATGAGGTG
CAGGGCGTGC CACTCACCTC ATAA
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| Protein sequence | MHYFAYKTQL LAALLLFLSL PALAQHTPAA RCGVATGFPP YQFSAGGETT GFDADVARLI
FKRLGMPFQF RQQAWDLVFN ELRFGDIELI AGMEINALRT KFFDFTRPYY YRYDVIFILE
DNQQITKLED LHNQFVSGDR HSYIETHWKE LGTLYDFRII ATPSKERSMQ LLKEGKIQAA
IMPKAVGLYL AQQMGIEVKI LDNPDPGSPV AFAVKRGNHQ LLVQIDEALE ALISEGEIQR
LYEKWFPEHP QRHDEKADEV QGVPLTS
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