| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2520 |
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| Symbol | |
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| ID | 4921287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2965223 |
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| End bp | 2967334 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164114 |
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| Product | outer membrane protein, putative |
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| Protein accession | YP_001094645 |
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| Protein GI | 127513448 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.383126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAC TTAAAGGGAC TCACACACGC GCTTGGTCAC TCAGCCTGCT GACCCTCTCA
ATTCTCAGCA GCCTGGCATC GGCTCAGGGG TACGATCTCG CCTCCGCCAA TCGCAGCTCG
GTGAAGATGG ATGCCTGGAA ATGCCAGCGC TGTGAAGTCA AAGATGCGAC TACAGGTGAG
ATAGGCGTCG GCGTCGCCTA TAACGACGGC GGCGATAGCC GTTTCGGCAA CACCACGGGC
ACAGACACAG ATGGCGCCGT GGCGAGCCTG GAGGCAGACC TGACCCACAA GAAGGCCTCT
GGCTACCAGA CCCAATTTAA GGCAGACCGC CTAGGCTACG ACGCCGGCTC GGCCAGCCTA
ACCACGGGGC GCAAGGGCCA GTACGAGATA GCCGCCAGTT ATCGAGGCTT TGCCCGCTTC
GACAACAACG CGGCGCTAAC CCCCTATCGA CTAACGGCCG CTAGTTGGCA GCTACCCAGC
CAATGGCAGA GCGCCGCCAC AACCGATCAG ATGAGCAGCC TAAACGATAG CCTGATGGCG
AGTGAGCTTA AGATCACCCG TGACCGCTAC CGTCTCGACG CCGCCTATAC CGGCAGCTTC
TACGAGGCTA GCCTCGGCTA CCAACATGAG CAGCGTCAGG GCAATCGCCG TGCCAGCGCC
AATCTGCTCA CCAACAGCAC CATGCTGGCC GAGCGCGTCG ACGACAAGAG CGATCGCATC
GAAGGCAAAC TCTACTTTCG CGGCGATCAG TGGCTGACCG GCATAGATGC CGAGCTCAGT
CATTACAAGA ACGATATCAA TGCCCTGCAC TGGCAATCGG CGTTCAGCCC CACCTTCGGC
GCCGCCTATT ATGGCCAGAG CGCTGTAGCG CCCGATAACA AGGCCTATCG CGTGGCGGCA
CACAGCCAAT TCTCCGCCTC GGGGCAGCAG GTGCTGATGC ATCTGGGTTT TAGCCGCATG
ACCCAAGATC AGGCCTATCT GCCGGCCACC ATCAACGGCC CTTCCCCCAT GCTGCCTGCG
ACCAATCTCG ACGGCCAGGT AGATCTGCTG GAGATGAAGC TTAAGTATCT CGGGCGTCTC
ACCCCAGAGC TCAGCCTTAG GGCCGGCTAC GATTATCGCG ATCGCGACAA CAAGTCTGAG
ATAATGAGTT ACCCGCAGAT CATTACCGAC AGCTACTACA GCGGCGATAA GCTTAATCAA
GCCTATGACC GAACCCGTCA ACAGGCGAAT CTGGGGGCCA AGTACCGCTT TACCCGCAGC
CTCTATCTGG ATCTGCAATA CCAGTATGAG CACAACAACT ACAACGCCCT CGACCGCGAC
AGCCTGCAGA CATCAGATGT TACGGCCAAG CTCCACTATC GACTCTCCTC CCAATGGCAG
GCCTGGCTTA AGGCCGAGTT TGAGGATCGC GGCGGCAGCA AATATCTGGG CTCGAGCGTC
AGCAATCGCC CCAACAACCC GCTGTTAAGA CGCAGCTATC TCGCCGACCG TGAGCGCCAG
CGTTATGGCC TCTACACCAG CTATAACGGC GAGGCACTCA GCGCCACGCT CAACCTGCAC
CTGATGCAGG ATGACTACAC TGACACCCAG ATAGGCCTGA CCCAGGTCGA TAGCCAGGGT
TATGATCTCT CCGCCAACTA TGCCCTGAAT GAGCAGATTA ACCTCAGCGC CTTCGTCAAT
CAGGACTGGC GCGACAGCGA TCAGGCGGGC AGTAACAACT TCGGTAGTGC CAACTGGTTT
GCCACCACCA AGGATAAGGC GACCCTTATC GGTGCCGGGT TCGATTACGA CGCCCTGATG
GAGAACCGTC TGCGACTAGG CCTCAACTAC AGCTATAGCG ACGGCCAGAG CGACACAGAG
GTCAGCCAGG GTCTGCACAG CCCATACGGC AGCTATTACG CCACCCGGCA CAATCTCAAC
GCCTTCGCCG ACTTTAATCT CAGCGAGAGC CTGGGGCTGC GGCTGGATTG GATCTTCGAG
CAATACCAAG ACGCCGACTG GGCCAACGGC AAGCTGATGC CAGACAGCAT CCCCAACGTG
TTGACCTTCG GTGACCTCAG CCATGATTAC AACGCCCACT ACTTTGGAGT GACCCTGAGT
TACCAGCTGT AA
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| Protein sequence | MNRLKGTHTR AWSLSLLTLS ILSSLASAQG YDLASANRSS VKMDAWKCQR CEVKDATTGE
IGVGVAYNDG GDSRFGNTTG TDTDGAVASL EADLTHKKAS GYQTQFKADR LGYDAGSASL
TTGRKGQYEI AASYRGFARF DNNAALTPYR LTAASWQLPS QWQSAATTDQ MSSLNDSLMA
SELKITRDRY RLDAAYTGSF YEASLGYQHE QRQGNRRASA NLLTNSTMLA ERVDDKSDRI
EGKLYFRGDQ WLTGIDAELS HYKNDINALH WQSAFSPTFG AAYYGQSAVA PDNKAYRVAA
HSQFSASGQQ VLMHLGFSRM TQDQAYLPAT INGPSPMLPA TNLDGQVDLL EMKLKYLGRL
TPELSLRAGY DYRDRDNKSE IMSYPQIITD SYYSGDKLNQ AYDRTRQQAN LGAKYRFTRS
LYLDLQYQYE HNNYNALDRD SLQTSDVTAK LHYRLSSQWQ AWLKAEFEDR GGSKYLGSSV
SNRPNNPLLR RSYLADRERQ RYGLYTSYNG EALSATLNLH LMQDDYTDTQ IGLTQVDSQG
YDLSANYALN EQINLSAFVN QDWRDSDQAG SNNFGSANWF ATTKDKATLI GAGFDYDALM
ENRLRLGLNY SYSDGQSDTE VSQGLHSPYG SYYATRHNLN AFADFNLSES LGLRLDWIFE
QYQDADWANG KLMPDSIPNV LTFGDLSHDY NAHYFGVTLS YQL
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