| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2514 |
|---|
| Symbol | |
|---|
| ID | 4921281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2957742 |
|---|
| End bp | 2958512 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640164108 |
|---|
| Product | tRNA--hydroxylase |
|---|
| Protein accession | YP_001094639 |
|---|
| Protein GI | 127513442 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4445] Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000610291 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCC TATTAGCCCC GATAAAGCAG TTCCTACAAT GTGAAACCCC TGATGAGTGG
ATAGCGCTCG CCAGCCAGCC GGAGCAGCTT GCTGCGCTGC TTATCGATCA CTGTAACTGT
GAGCTGAAGG CGGCGCAGAC GGCGATGTTT TTGATCCGTA AGTATGCGGT GGATAAGGCG
AGTGGCGATC AGCTACTCCA GTGGGCCAAG CCCTATGAGG AGTTCGTCTA TAACAAGTCG
CGGGATATCG ATGCCTTTCT GGCGCGGGAT GTGAAAAAGA ATGAGCTGGT GGGGGAATTG
TCCGCGAAGG ATGGAGTCGA TTACGGCCAG GATCTTATCG CCAAGATGGT GCGCCTGATA
AAAGAGGAAT TTCACCATTT CGAGCAGGTG CTGGAGATCA TGCAGGCACG GGGCATACCC
TATCAGAATC TCACCGCCGG TCGCTATGCC AAGGGGATGA TGCGCGCGGT GCGCACCCAT
GAGCCGGCTA CCCTGGTAGA TAAGCTGATC GTCGGTGCCT TTATCGAGGC GCGTTCCTGT
GAGCGTTTCG CCAAGCTGGC GCCTTATCTC GATGAGGGCC TGAGTAAGTT CTACGTGTCG
CTGCTGCGCT CAGAGGCGCG TCACTATCAA GATTATCTGG TGCTGGCCCA GGCGATATCG
CCTGAGAATA TAGATGAACG TGTGGCTTAC TTTGCCAAGC TGGAGGCGGA ACTTATCAGC
GCGCCAGACA GTGAGTTTAA GTTTCACTCG GGAAGGCCTG AGACCTGTTG A
|
|---|
| Protein sequence | MQALLAPIKQ FLQCETPDEW IALASQPEQL AALLIDHCNC ELKAAQTAMF LIRKYAVDKA
SGDQLLQWAK PYEEFVYNKS RDIDAFLARD VKKNELVGEL SAKDGVDYGQ DLIAKMVRLI
KEEFHHFEQV LEIMQARGIP YQNLTAGRYA KGMMRAVRTH EPATLVDKLI VGAFIEARSC
ERFAKLAPYL DEGLSKFYVS LLRSEARHYQ DYLVLAQAIS PENIDERVAY FAKLEAELIS
APDSEFKFHS GRPETC
|
|---|
| |