| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2497 |
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| Symbol | |
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| ID | 4921343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2936096 |
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| End bp | 2937166 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164088 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001094622 |
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| Protein GI | 127513425 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00185562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0915842 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCAATC AATTTCAACA AGACAACCTC ATAGGTCAGT CGAACGCTCT ACTGGAAGTC
CTTGAGCACG TTTCAAAAAT TGCACCCTTA TCTAAGCCAG TCTTAATTAT TGGCGAGCGC
GGAACCGGTA AAGAGTTGAT CGCCGAGCGC CTACATTATC TCTCCAAGCG CTGGGATCAA
AGCTTTATTA AGCTAAATTG TTCATCTCTC AGTGAAAACC TATTAGAGAG CGAGCTCTTC
GGTCATGATG CAGGCGCCTT CACCGGCGCC AACAAGAAGC ATGAAGGACG TTTCGAGCGC
GCCGATGGCG GCACTCTGTT TTTAGACGAG CTCGCCAACA CCTCTGGGTT GATCCAAGAG
AAGCTGCTGC GCGTCATCGA ATATGGTGAA TTTGAACGTG TGGGGGGCAG CAAGACGGTA
CAGACAGATG TGCGCCTGGT GTGCGCCGCC AACGAAGATC TGCCCTCCTT GGCCGAAGCG
GGCGAATTTA GGGCCGACCT GCTCGACCGC CTGGCATTTG ATGTGATCAC CCTGCCGCCT
CTGCGTCATC GCCCGGAAGA TATCATGCCC CTGGCCGAAT ATTTCGCCAT CGGCATGGCT
CGCCAGCTTA AACAACCACA ATTTGATGGC TTTAGTCGCA ATGCCATCGA CCAATTACTG
GATTATCACT GGCCGGGTAA TATCCGTGAG TTGAAGAACG TGGTCGAGCG CGCCGTCTAT
CGCAATACGG ATCAGGAAGA GCCGATCGAC AGCATTATCA TAGATCCCTT TGCTTCCCCT
TATAGGCCGA CCAACCGCGT CAAGACCAAG TCCCGTCAGG TGCAGAGTGA ACAGGCCGTT
GAGCAGGAGA GCCCAGCGAC GCCCGCTACC GAATCAGCCA GCAAGGCTAA CGGCCTAGAT
ATCAGCTTCC CACTGGACTT TAAAGAGCAT TGTGAGCAGC AGGAGATCTT GCTGCTTAAG
AAGGCGCTGG AATCGGGGCA ATACAACCAG AAGAAGACGG CGGAGCTGCT CGGGCTTAGT
TACCATCAGC TGAGAGGCAT CTTAAAAAAG TACAACTTAC TGGATAAATA A
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| Protein sequence | MANQFQQDNL IGQSNALLEV LEHVSKIAPL SKPVLIIGER GTGKELIAER LHYLSKRWDQ
SFIKLNCSSL SENLLESELF GHDAGAFTGA NKKHEGRFER ADGGTLFLDE LANTSGLIQE
KLLRVIEYGE FERVGGSKTV QTDVRLVCAA NEDLPSLAEA GEFRADLLDR LAFDVITLPP
LRHRPEDIMP LAEYFAIGMA RQLKQPQFDG FSRNAIDQLL DYHWPGNIRE LKNVVERAVY
RNTDQEEPID SIIIDPFASP YRPTNRVKTK SRQVQSEQAV EQESPATPAT ESASKANGLD
ISFPLDFKEH CEQQEILLLK KALESGQYNQ KKTAELLGLS YHQLRGILKK YNLLDK
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