| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2487 |
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| Symbol | |
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| ID | 4921382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2926619 |
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| End bp | 2927521 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164077 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_001094612 |
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| Protein GI | 127513415 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.60651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.017573 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCCAC TCGTCTATCA CGCCAGCTAT TCACAGCTGG CGTTACCCCA CCACCACAGA
TTTCCCATCA CTAAATACCA GGCACTCTAC CAATACTTAT TGGATAGACA GATAGTCGAC
CCGACCGCAT TTCACTCCCC CGAGGCGGTC AGCCTGGAGT GGCTGAAATC GATCCATTGT
CCAGACTATG TCATGCAGTT TATCGAGCAA CGTCTGCCCG ACAAGGCGGT GCGCCGACTG
GGATTTCCCC TTAGCGAGCG ATTGACTCAG CGGACACTCT ACTCTGTCGG CGGCACCCAT
CTTGCCTGTG AGCTGGCAGT TAGACATGGC GTTGCCCTGC AACTCAGCGG CGGTTATCAC
CATGCTCACT ATCAGTTTGG CAGCGGCTAC TGCGTATTTA ACGATCTGAT CTCCGCCGCC
CTGCATGCCC AGAGCCTGGC GGGCATAGTG ACAGTGCTCA TCTTCGACTG CGACGTGCAT
CAGGGCGATG GTACCGCCGC CATGGGCCAG GCCTATGACA ATCTCTACAC CTGCTCCATT
CACTGCCAGG AAAACTTCCC CGCCCGCAAA CAGACCTCAG ATCTCGATCT GGAGTTGAGC
CGCGGTGTCG GTGATGAGGA ATATCTCGAG GCTGTCGCTC AAACCTTAGC GCTCGCAATT
CGCCTCTATC AGCCGGATTT GATTATTTAT GATGCTGGGG TCGATGTGCA TCAGGCCGAC
AGGCTAGGCC ACCTCAATAT CACCACAGAA GGGATCTACC AAAGGGACAG GCTGGTGCTG
GACAACGCCA AGGCGGCCAG CATTCCCATC GCCTGCGTCG TCGGCGGGGG TTATAGCAAG
GAGATAGAGG TGCTCGCCGA GCGCCACGCA CAAGTTTTTA TTGCCGCTCA CGCCATATGG
TAG
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| Protein sequence | MVPLVYHASY SQLALPHHHR FPITKYQALY QYLLDRQIVD PTAFHSPEAV SLEWLKSIHC
PDYVMQFIEQ RLPDKAVRRL GFPLSERLTQ RTLYSVGGTH LACELAVRHG VALQLSGGYH
HAHYQFGSGY CVFNDLISAA LHAQSLAGIV TVLIFDCDVH QGDGTAAMGQ AYDNLYTCSI
HCQENFPARK QTSDLDLELS RGVGDEEYLE AVAQTLALAI RLYQPDLIIY DAGVDVHQAD
RLGHLNITTE GIYQRDRLVL DNAKAASIPI ACVVGGGYSK EIEVLAERHA QVFIAAHAIW
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