| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2446 |
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| Symbol | ribA |
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| ID | 4921602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2875735 |
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| End bp | 2876352 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164036 |
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| Product | GTP cyclohydrolase II |
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| Protein accession | YP_001094571 |
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| Protein GI | 127513374 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0807] GTP cyclohydrolase II |
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| TIGRFAM ID | [TIGR00505] GTP cyclohydrolase II |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.654451 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000021691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGTCGATTA AGTATGTCGC CACCTCAAAG CTTCCCACCC CTTGGGGAGT GTTTGCCATG
CATGGTTTCG AAGATACAGA GACGGGCAAA GAACATGTGG CGCTCACCTT TGGCGAGTTA
GATGCGAGCC AGCCCATTCT GGGCAGAATT CACTCCGAGT GTCTGACCGG CGATGCCCTG
TTCAGTCTGC GCTGCGATTG TGGTTTTCAG CTACAAACCG CGATGCAAAA TATCGCCGAG
GCGGGTCAGG GATTTATTCT CTATCTGCGT CAGGAAGGCC GTGGTATAGG TCTGCTCAAT
AAGATCCGTG CCTATGAGCT GCAGGATCAA GGCGCCAATA CGGTAGAAGC CAACGAGCGT
CTGGGGTTTG CCGCCGATAT GCGCAAATAT GACATGATCA AGCCCATGCT TGAGAAGATT
GGTGTGCAGC AGGTGAAGCT GATGACCAAT AATCCCCGCA AGGTGAAGGC GATGAAGGAA
CTTGGCATCG CGGTTATCGA GCGCGTGCCA CTGCAGGTGG GTAAGAATCG ATATAACGAG
GCCTATCTTA AGACCAAGTC GACCGAGCTG GGTCACATGA TGTCTGAATA TCACTTCACC
GAAGAGCATC AAGACTAA
|
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| Protein sequence | MSIKYVATSK LPTPWGVFAM HGFEDTETGK EHVALTFGEL DASQPILGRI HSECLTGDAL
FSLRCDCGFQ LQTAMQNIAE AGQGFILYLR QEGRGIGLLN KIRAYELQDQ GANTVEANER
LGFAADMRKY DMIKPMLEKI GVQQVKLMTN NPRKVKAMKE LGIAVIERVP LQVGKNRYNE
AYLKTKSTEL GHMMSEYHFT EEHQD
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