| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2411 |
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| Symbol | |
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| ID | 4921741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2830891 |
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| End bp | 2832951 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164001 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_001094536 |
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| Protein GI | 127513339 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.82841 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAATA TCCCCTTGAG AGTAAATTCA TTGGCCACCG AACACCCGAA TAACGCACAA
AATAGTGACA AAATGCCTAC ATTCGACGCA ATTTTCAGCC ATTTATCGGC GATAGCGAGT
CACAACTCTC ACCAAATTAT CGCCCTACTC CCAAGCAGCG ATGCCAACTG GCCTGCCGCG
CTTATAGCAG AGCGACTAAC ACAAGCCGGT TCAAAGCAAC ACCTTCAAAA GCAGCATCTT
CATCTACACC TGTTTGCCCA GCATCAGGCA AGCTGGCTTA AGGCCCTAGC CGAGAGTGAA
ACCCTGGCGT CACCAGCCAA AGAACAGATT AAGGCGATTT GCGACGCTCG GGTGTCGGGC
AGTCACAGGC TCAAGCTGGT AAATGCGCGG CTTATCATCG ACATCCATCT TGGCGATCCG
CTTACCCAAC TCAAAGACTT AGTCTCCCCA AGCCTAGCAA GTCAAGCAAT CCAAGGCTGG
CTGGCGAATA CCCAGGCTAC CGATGAGGCG CTTATCTGGC AGATGGCGCG CCTCAGCCAA
GATAACGCCG AGTTTCTCCT TCTCGAGAAT AACGACGTCA ATCTAGACAA GACCTCAAAT
AACGCCAATA CCAACTTACT GACTCAGTTG ATCATCAAGG CGGGTTTTAC CTGCTATCGC
CTTAACTTAT CTCTAAAAGA TGACCAGCTC GTGACTCTGG CCGAAAAACC AAGTCTAGCG
TCGCTGGAAA TCGCCATGGT GGAGCGGCGC GCCCTCAGAC GCCAACAATT AGATAAGTTT
GCCTTCAACC CCTTAACACA AGGTCGTGAG GGAGAAACCG CCATCATAGG TGGTGGGGTC
GCCAGCGCGA ACCTGGCGCT ATCGCTGGCC GAGCGCGGCA AAAAGGTTAG CTTCTTCTGT
ATGGATAAAG CGCCGGGCGA GCAGGCATCG GGCAACAAAC AGGGCGCTAT CTATCCCCTG
CTCACCCCAG AGCATGGCAG CCTGAGTCAC TATTTTCTGC TGGGTTACCT CTTTAGTCGT
CAAAGGATCA AGCAGCTCCT TGAGTCGGGC CATGAGATCC CCCATGATTT TTGCGGCGTG
CTGCAGACCG GTCACGATGA GCGCAGCCAT AAGCGCCTCA CTAAGATAAT CAACGCCCAG
CCCTGGGCGG AATCTATCGC TCGCCCTGTC GATGCCCTCC AGGCCACGGC GCTCGCCGGG
GTCACCATAG AACACCAGGG GATCTACTAT CCGCTCGCTG GCTGGGTGTC GCCACAAGCC
TTTACCCGCG CGGCCATCAG CCAGGCCGAA CGGTTAGGTA AACAGACCAG CCACTACCAA
TGCCAAATCA CGGCGATTAG ATTCGAGAAC CAGCAATGGT ATCTCAGCGC CATTCAAGAT
GGTCAAAAAG TCGAATTTGG CCCCTATGCC AATCTGGTGC TGGCCAATGG CCGCCACCTG
ACCGATTTCG CCCAAACCGA CCACTTACCC ATCAGCGGTT TTCGCGGCCA GGTCAGCCAT
ATTCCAGAAA GAGCGCCACT TAAGGATCTT AAGACGGTGC TCTGCGCCCA CGGCTACCTA
ACCCCTGCCC ACGATAAGCT GCACTGCACA GGGGCCAGCT ATGTGAAAGA CGCCAGTAAC
CTCGATTACA GCGCGGTGGA GCAGGTGGAA AATTTAGACA AGATCCGCAC CAGCTACGGC
GGCGAGTGGA CCAAGGCGGT GGATATCACA GGCCATAGCG CTCGCGTAGG CGTGCGTATG
GTCACACGGG ATCACGCCCC CATGATGGGC TGTGCCCCTG ACTTTGAGGC GATATCGGCT
ACCTATATCA GCCATCAGCA AACCAAAAAG AGCACCAAGG AGAGCGCCAA GTGTTGGCAG
ACGACAAGCG CCCCCGTGCA TCAGGGACTG TTTATTCTCG GCGGACTCGG ATCGCGGGGC
CTCACCTCTG GCCCGCTGGC GGCAGAGATC TTAGCCGCCC AGCTTTGCGG CGAGCTCCTG
CCCGCCACTC AGGATATTTT AGCCCTGCTC AACCCCAACC GTATGTGGAT GAGAAAGCTG
ATTAAGGGTA AGGCGCTGTA A
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| Protein sequence | MPNIPLRVNS LATEHPNNAQ NSDKMPTFDA IFSHLSAIAS HNSHQIIALL PSSDANWPAA
LIAERLTQAG SKQHLQKQHL HLHLFAQHQA SWLKALAESE TLASPAKEQI KAICDARVSG
SHRLKLVNAR LIIDIHLGDP LTQLKDLVSP SLASQAIQGW LANTQATDEA LIWQMARLSQ
DNAEFLLLEN NDVNLDKTSN NANTNLLTQL IIKAGFTCYR LNLSLKDDQL VTLAEKPSLA
SLEIAMVERR ALRRQQLDKF AFNPLTQGRE GETAIIGGGV ASANLALSLA ERGKKVSFFC
MDKAPGEQAS GNKQGAIYPL LTPEHGSLSH YFLLGYLFSR QRIKQLLESG HEIPHDFCGV
LQTGHDERSH KRLTKIINAQ PWAESIARPV DALQATALAG VTIEHQGIYY PLAGWVSPQA
FTRAAISQAE RLGKQTSHYQ CQITAIRFEN QQWYLSAIQD GQKVEFGPYA NLVLANGRHL
TDFAQTDHLP ISGFRGQVSH IPERAPLKDL KTVLCAHGYL TPAHDKLHCT GASYVKDASN
LDYSAVEQVE NLDKIRTSYG GEWTKAVDIT GHSARVGVRM VTRDHAPMMG CAPDFEAISA
TYISHQQTKK STKESAKCWQ TTSAPVHQGL FILGGLGSRG LTSGPLAAEI LAAQLCGELL
PATQDILALL NPNRMWMRKL IKGKAL
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