Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2374 |
Symbol | |
ID | 4921901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2775885 |
End bp | 2776784 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163964 |
Product | NAD-dependent epimerase/dehydratase |
Protein accession | YP_001094499 |
Protein GI | 127513302 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.165792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000137233 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGATAACTT CTGTTGCCGT CGTCGGCTGC GGCTGGTTTG GTCTGCCTTT GGCCAAGGCC CTGTTAAGCC AAGGATTAAA GGTCACGGGC TCCAAGCGCT CGCCACAGGA GGCCGAGGCC TTATCAGCCG ATGGAATCAC TGGCTTTGCG CTGGATTTAG AAACGCTTGA GAGTGAAGAT TTGTCCTCTC AGACCCGCGA AGCGATAACC CAAGGCCTCG CCTGTGATGC CATAGTGATC AACATTCCCC CAGGACTTCG CCGTGGTGAT AACGGCTATC TGGACCGCCT CAAGCGCCTC AAGGCGTTAA TGGGGACTCA CGAATATCAG CGCATCATCT TTATCAGCAC GTCTGGTGTC TATCCTGCCG GTGGCGACAG CTCTGGCAGT GGTTGCGTCG AGAGCGATGC TAAGGTCCAC AGCCCGGCGA GCGAGACCTT ACTGGCCGCC GAGGCGCTCT TCTCAGGTGC TAACTCTGCC GATGGCGTGT CCAACAATCA CTCTGATGGT AGCGAGTCTA ACAATAGCTG CGTCGTCGTG CGTTTCGCCG GTCTCATTGG TCCCAAAAGG CATCCAGGAC GATTCCTGGC GGGAAGAGAA GATGTGCCAG GCGGTAACCT AGCGGTGAAT ATGGTGCATC TCGATGATTG CATTGGTGCC GTGACCTTGC TGCTGAAAGC CGAGGGGGCT TTATCGCCAG CCTATAATCT CTGCGCGCCG CTGCATCCCA CCAAAGCTGA ATTTTATCAA AAAGCGGCGA CTCAGCAGGG GCTCACGCCG CCCAGCTTTA TCGAGGGAGA CTTAGCTGAA GATAAGCGCG TCGATGGAGG CCTTATCACC CGGGAGTTAA ACTATCAGTA TAAGTTTACC GATCCCCTAG CCATGTTGAC CCATTGCTAG
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Protein sequence | MITSVAVVGC GWFGLPLAKA LLSQGLKVTG SKRSPQEAEA LSADGITGFA LDLETLESED LSSQTREAIT QGLACDAIVI NIPPGLRRGD NGYLDRLKRL KALMGTHEYQ RIIFISTSGV YPAGGDSSGS GCVESDAKVH SPASETLLAA EALFSGANSA DGVSNNHSDG SESNNSCVVV RFAGLIGPKR HPGRFLAGRE DVPGGNLAVN MVHLDDCIGA VTLLLKAEGA LSPAYNLCAP LHPTKAEFYQ KAATQQGLTP PSFIEGDLAE DKRVDGGLIT RELNYQYKFT DPLAMLTHC
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