| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2356 |
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| Symbol | |
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| ID | 4921728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2749563 |
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| End bp | 2750600 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163941 |
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| Product | patatin |
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| Protein accession | YP_001094481 |
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| Protein GI | 127513284 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4667] Predicted esterase of the alpha-beta hydrolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTCTC TTAATTCTGG CTTTCCTAAT GCTGGGTTTC TTACTGCCAG TTTTCCTAAC
ACTGGTTCTC AAAATACTGA TTCTACCGGC TCGCTTTCTC TGTTGGACCC ATCCTTGACT
CCTAAGGAAG AGGACAGTCA GCTAGGGCAA GAGCTAACGC CCGTACAGGC CAATACGGCG
CTGATTGCCG AAGGCGGTGG GCAGCGGGGG ATATTCACCG CAGGTGTGTT GGATGCCTGG
CTTGAGAGAG GCTATAACCC TTTTGCGCTG CTCATCGGTA CTTCGGCTGG TGCGCAGAAT
CTCTCGAGTT ATCTCACGGG GCAGATTGGC TTTGCCAAGC AGGCGATTAA GGGCTTGTCC
CGCGATCCGC AATTTGTGAA GGTGAGTCGC GGTCTTGCCG GGAAGAGTAC TGTGGATCTC
GATTGGTACT TTAATCAGGT GCAAGGCGAG TCGTTAGGCT TGGATCTGTC TGCCGGGATG
CGGGCATTGA GACATCGCCA GCTGCTTTTT AGCATGACCA ATGGTTCCAA CTATCAGGCG
ATATTTCGTC AGCCCGATAA GCAGAACTGG CTGGAGTTAC TCAAGGCGTC GAGCGCGCTG
CCGTTTCTCT ATCGCCAAGG AGTGCCTTTA GAGGACAGCT TTTATGTCGA TGGCGGCCTG
TCGGCTCCGT TGCCGGTGGA GGAGGCCTAT CGGCGTGGGG CGACTAAGAT AGTGGTGATC
CGTACTATGC CCGAGGAATA TCAGGCTTAT ACCCCTTGGG TGAATCGTCT CAAGTCTAGG
ATCTGTAGCT CGAATCGCTG CCCGAGGGCG ATAGAGTATT ACCTGCATCA TGAAGCCGAA
TATAAGCGCT CACTTTCCTT TATCGACAAT CCACCTGAGG GCGTGGAGAT CATTCAGCTA
TTTCCCCGCC GCGCACTGGC GAGCAAGTTA CTCGGCAGTT CGACGGCAGA GCTTGATAGG
GATTATCGCC TCGGGCGGCT GGCGGGATTT AAGTTCCTGA AACAGGATAG CCTTTCCACC
ATGAAATGCG CCGCATAA
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| Protein sequence | MHSLNSGFPN AGFLTASFPN TGSQNTDSTG SLSLLDPSLT PKEEDSQLGQ ELTPVQANTA
LIAEGGGQRG IFTAGVLDAW LERGYNPFAL LIGTSAGAQN LSSYLTGQIG FAKQAIKGLS
RDPQFVKVSR GLAGKSTVDL DWYFNQVQGE SLGLDLSAGM RALRHRQLLF SMTNGSNYQA
IFRQPDKQNW LELLKASSAL PFLYRQGVPL EDSFYVDGGL SAPLPVEEAY RRGATKIVVI
RTMPEEYQAY TPWVNRLKSR ICSSNRCPRA IEYYLHHEAE YKRSLSFIDN PPEGVEIIQL
FPRRALASKL LGSSTAELDR DYRLGRLAGF KFLKQDSLST MKCAA
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