Gene Shew_2303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2303 
Symbol 
ID4922296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2699059 
End bp2699547 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content52% 
IMG OID640163888 
Productcolicin V production protein 
Protein accessionYP_001094428 
Protein GI127513231 
COG category[R] General function prediction only 
COG ID[COG1286] Uncharacterized membrane protein, required for colicin V production 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTTGGA TCGATTATGC CATTATTGCG GTCATCGCAA TCTCGACTTT AATTAGTCTG 
CTTCGTGGTT TCGTTAAGGA AGCCATGTCA CTCGTGGTCT GGTTTGCCGC CTTCTTCGTG
GCGAGTCAAT TTTATGAAGA TCTCGCCGTC TACCTGACCC AGATGCAAGA TGAAATGGTG
CGTAACGGCA TCGCCATCGC CATCCTGTTC ATCTCGACCC TTATTCTCGG TGCCTTAGTT
AACTATCTCA TCGGCCAACT TGTGGTCAAG ACGGGCCTGT CTGGCACAGA CAGGGTGCTG
GGCCTCTGTT TCGGCGCCCT GCGCGGCGCA CTCATCGTTA GCGCGATACT CTTTTTCCTG
GACGCCTTTA CCGGGGCGCC CAAGACAGAC TGGTGGGCCA GCTCGCAACT GGTTCCCGAA
TTCGGAGTGG TTATCCAGTG GTTCTTTGAC TATGTGGAAA ACACCTCAAG CTTTGTACCT
AAAATATAA
 
Protein sequence
MVWIDYAIIA VIAISTLISL LRGFVKEAMS LVVWFAAFFV ASQFYEDLAV YLTQMQDEMV 
RNGIAIAILF ISTLILGALV NYLIGQLVVK TGLSGTDRVL GLCFGALRGA LIVSAILFFL
DAFTGAPKTD WWASSQLVPE FGVVIQWFFD YVENTSSFVP KI