| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2298 |
|---|
| Symbol | |
|---|
| ID | 4922291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2690488 |
|---|
| End bp | 2692431 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640163883 |
|---|
| Product | putative alpha-glucosidase |
|---|
| Protein accession | YP_001094423 |
|---|
| Protein GI | 127513226 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCAGC GTTTTTTGAC GGCGCCCCAG GCGTATAAGC AGCTGATGTT GGCCGGAGTG
CTAACGCTTC CCTGCGCACT GGCCATGGGC GAGACCTATC AACTCAGCTC CCCGGACGGC
AGCATCTTGG TCGATGTCAT CGCCGAGGAG CAGCTCAGCT ATCGCGTCAG CGTCGACGGC
CAAACCATCC TGGCCCCATC ACACATCGCC ATGACCTTTG CCGATGGCAC GGCGCTCGGA
AAGTCGCCTC AAGTGGTTGA GGTCAAGCGC AGTGCCATCT CAGAGCAGCT CACCCCGGTT
ATCAAGGTGC GTACCGCCAA AATAGACAAC CAATACAACC AGTTGAGCCT GAGCTTCAAA
GATAACTACC AAGTGGATTT TCGCGCCTTC GATGAAGGAG TCGCCTATCG TTTCAGCGCC
CAGCAGTCTG GCAAGAGTGC CCTCACCTCT GAACAGGCCG AGTTTAACTT CGCCAAAGGC
GCCTTCGCCT ACTTCCCCTT CGAGAAGAAG TTTGCCAGCG CCACCCAACC CAGATTTACC
CCCATCGCCG CCAAGGGGAT AGACAAGGAC GAGCTGGGTA GCCTGCCGGC CCTGTTTGTG
GTCAATGGCG TCAATGTGTT GCTGACCGAG ACAGACCTGC AGAGCTATCC CGGCCTCTGG
CTAAGGGGCA AGGGCGATGG CAATGTCTAT GGCGTGCACC CATTCGAGCT AGATAAAGAT
GAGCAGTACA CAAAGGATCT TGGCATAGTC AGCAAGTCTC GCAGCTATCC CTGGCGCATC
CTGGCCATCG CCCGCAGCGA CGGTGAGCTG CTCGACAATC AGATGAGCTA CACCCTGGCC
GAGCCGTCAC GCATCGAAGA CACCTCCTGG ATCAAGCCAG GCAAGATCGC CTGGGACTGG
TATAACGAAA ACAACCTCAA GGGGGTCGAC TTCAAGGCGG GGATCAATAC CGAGACCTAC
CAGTATTACG CCGATTTTGC CGCCGACTTT GGCATCGAAA ATATCTTGAT CGACGATGGC
TGGTCGTCAC AGGAGGATGT ACTTAACGTA TTGCCGGGGA TCGACATGCA GGCGATCATC
GCCCATGCCA AGGCCAGAGG CGTCGGGGTA CAGCTATGGG TGCCCTATTC GGCGCTGGAC
AAGAACCTGG AAGAGGCGTT TAAGCTCTAC GCCAAATGGG GGATCAACGG CGTCAAGATA
GACTTCATGG ACAGCGACAG CATCAAGCGG GTGGATTTCT ACTGGCGCGC CGCCGCCATG
GCCGCCAAGT ACAAGCTGAT GGTCAACTTC CACGGCGCCT ACAAGCCCGC GGGGATCCAC
AGAACCTACC CCAACGTGAT GACCCGCGAG GGGGTCAGAG GATTGGAGAA CAACAAATGG
TCAGAGGTGA CCTCTACCCA CAACCTGCAT CTGCCCTTCA TCCGCATGAT AGCGGGTCCG
CTGGATTACA CCCCGGGCGC CATGGCCAAT GCCCAACAGA AGAACTTCAA CAAGGTCTGG
TCTCGCCCCA TGAGCCTCAC CACCCGGGCG CAACAGATTG CCATGTATGT GATCTACGAG
AGCCCGCTGC AGATGCTCGC CGACACCCCC ACCAGCTACC GCGCCGAACC TGAGATCCCG
CGCTTTATCG CCGCCATTCC TACGGTATGG GATGACTTTA AGGTGCTGCA TGCCAGCATA
GGCGAGTATT TCACCATAGC GCGCCGCGCA GGTGATAACT GGTACATAGG CGCCATGACC
AATACCCAGG CGAGAAGCCA GCAGATCAAC CTGGACTTTC TTGGAGATGG TGAGTATGAG
ATGCAGCTGC TGCAAGATGG CATCAACGCG GGTAACTTCG CCGAAGACTA TAAGCTCATC
AAGAAAACCG TTACCAAGGG CGACAGCCTA GATCTCAACA TGGCGGCCAA CGGCGGCTAT
GCCATACAGC TGATCAAACG TTAA
|
|---|
| Protein sequence | MLQRFLTAPQ AYKQLMLAGV LTLPCALAMG ETYQLSSPDG SILVDVIAEE QLSYRVSVDG
QTILAPSHIA MTFADGTALG KSPQVVEVKR SAISEQLTPV IKVRTAKIDN QYNQLSLSFK
DNYQVDFRAF DEGVAYRFSA QQSGKSALTS EQAEFNFAKG AFAYFPFEKK FASATQPRFT
PIAAKGIDKD ELGSLPALFV VNGVNVLLTE TDLQSYPGLW LRGKGDGNVY GVHPFELDKD
EQYTKDLGIV SKSRSYPWRI LAIARSDGEL LDNQMSYTLA EPSRIEDTSW IKPGKIAWDW
YNENNLKGVD FKAGINTETY QYYADFAADF GIENILIDDG WSSQEDVLNV LPGIDMQAII
AHAKARGVGV QLWVPYSALD KNLEEAFKLY AKWGINGVKI DFMDSDSIKR VDFYWRAAAM
AAKYKLMVNF HGAYKPAGIH RTYPNVMTRE GVRGLENNKW SEVTSTHNLH LPFIRMIAGP
LDYTPGAMAN AQQKNFNKVW SRPMSLTTRA QQIAMYVIYE SPLQMLADTP TSYRAEPEIP
RFIAAIPTVW DDFKVLHASI GEYFTIARRA GDNWYIGAMT NTQARSQQIN LDFLGDGEYE
MQLLQDGINA GNFAEDYKLI KKTVTKGDSL DLNMAANGGY AIQLIKR
|
|---|
| |