Gene Shew_2290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2290 
Symbol 
ID4922312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2678109 
End bp2678579 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content59% 
IMG OID640163875 
Producthypothetical protein 
Protein accessionYP_001094415 
Protein GI127513218 
COG category[S] Function unknown 
COG ID[COG3238] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAACGC TTCTTCTGCT TGCGCTGCTT AACGGCGTCT GTATCGGTCT TTGCCGTATC 
CTCAATGGTC GTCTGGGTCA GGCGAGCGAT GCCTACTATG CTTCGCTCTG GAACCATGGC
GTGGGCTTTA TCTTCTTGAG TCTACTGCTG GTGTCTATGC CGACTCCGCC CATCGCGGTC
CTGCTCGATG CCCCCCTCTA TGCCTGGCTA GGCGGCGTCG TGGGTGCGGT GTTTGTGGTG
CTCAACACCC TGGTTATCCT AAGGCTGGGC GCGACCCTCT GCAGCCTGCT GGTGATCTCG
GGTCAGCTGC TGAGCGGCGT GCTGTTCGAC CTTGTGGTCA AGGCGGTCAA TCCGCTGCAG
CTGCTTGGGG TGATCATCAT CTTCGCCGGT GTGCTGGCTT TTCGCCGCAT GGAGGCGAAA
AGTGTCGAGC GGCAGGAGTT TGAGCTGGAG CAGCGAGAGA CTAAACACTG A
 
Protein sequence
MLTLLLLALL NGVCIGLCRI LNGRLGQASD AYYASLWNHG VGFIFLSLLL VSMPTPPIAV 
LLDAPLYAWL GGVVGAVFVV LNTLVILRLG ATLCSLLVIS GQLLSGVLFD LVVKAVNPLQ
LLGVIIIFAG VLAFRRMEAK SVERQEFELE QRETKH