| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2256 |
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| Symbol | trpA |
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| ID | 4922809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2636067 |
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| End bp | 2636870 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640163841 |
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| Product | tryptophan synthase subunit alpha |
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| Protein accession | YP_001094381 |
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| Protein GI | 127513184 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0159] Tryptophan synthase alpha chain |
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| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.077665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAACC GTTATCAGGC AGCATTTGCC GCACTTAACG CAAGCGGGCG TGGCGCCTTC
GTGCCTTTCG TCACCATAGG CGATCCCAAC AGAGAATTGT CGCTGAAGAT CATCGAGACC
TTAGTAGAAA ACGGCGCCGA TGCCTTGGAG CTGGGCTTTC CCTTCTCCGA TCCCCTCGCC
GACGGCCCGG TGATCCAGGG CGCTAACCTG CGCGCCTTAG CCGCGGGCAC TACGCCGGGT
GGCTGTTTCG AGATCATCAC TGCGGTGCGC GCCAAATACC CAGAGCTGCC CATCGGCTTG
CTGCTGTACG CCAACCTAGT GTATGCCAAC GGCGTCGAAG CCTTCTACGC CAAGGCCAAG
GCCGCCGGCG TGGATTCTGT GCTTATCGCC GACGTGCCAG TGGAAGAGGC AGCGCCCTTT
ATCGCCGCAG CCAAGGCCCA CGAGGTAGCG CCTATCTTTA TCGCGCCGCC CAATGGCGAT
GCCGAGACAC TGCGCCAGGT CGCCGAGCAG GGCCAGGGCT ACACCTACCT ACTATCACGC
GCCGGCGTCA CGGGCACAGA GTCGAAGGCA GGCATGCCGC TGGATGATAT CCTGGCCCAG
CTCAAGGCCT TCGACGCGCC GCCGCCCCTA CTGGGCTTTG GCATCGCAGA GCCAGATCAG
GTCAAGGCCG CCATCGACTC GGGCGCAGCG GGCGCCATCT CGGGCTCTGC CGTGGTGAAG
ATCATCGAGA CCCACCAAGA CGATGAGCAG GCCCTGCTCA GCGCCCTGGG TCAGTTTACC
CGTGAGATGA AGGCGGCAAC CTAA
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| Protein sequence | MSNRYQAAFA ALNASGRGAF VPFVTIGDPN RELSLKIIET LVENGADALE LGFPFSDPLA
DGPVIQGANL RALAAGTTPG GCFEIITAVR AKYPELPIGL LLYANLVYAN GVEAFYAKAK
AAGVDSVLIA DVPVEEAAPF IAAAKAHEVA PIFIAPPNGD AETLRQVAEQ GQGYTYLLSR
AGVTGTESKA GMPLDDILAQ LKAFDAPPPL LGFGIAEPDQ VKAAIDSGAA GAISGSAVVK
IIETHQDDEQ ALLSALGQFT REMKAAT
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