| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2255 |
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| Symbol | |
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| ID | 4922808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2634863 |
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| End bp | 2636074 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163840 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001094380 |
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| Protein GI | 127513183 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0133] Tryptophan synthase beta chain |
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| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0836198 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGACTA AGCTGGACCC TTATTTCGGC GAATATGGCG GTATGTTTGT ACCGCAGATT
TTGATGCCCG CCCTCAAGCA GCTCGAAGCC GCCTTCGTCG ATGCGCAGAA CGATCCGAGC
TTTCAAGCCG AATTTACCGA TCTGCTGAAA AACTACGCCG GCAGACCGAC CGCCTTGACG
TTGACCCGTA ACCTTAGCCC TAACCCTCTG GTGAAGATCT ACCTCAAGCG TGAAGATCTG
CTCCATGGTG GCGCCCATAA GACCAACCAG GTATTGGGTC AGGCCCTGCT GGCCAAGCGT
ATGGGCAAGA AAGAGATCAT CGCCGAAACC GGCGCCGGAC AGCACGGCGT CGCCACGGCC
CTGGCCTGCG CACTATTAGG CCTCAAGTGT AAGGTCTACA TGGGCGCCAA AGATGTCGAG
CGTCAATCGC CCAACGTGTT CCGTATGCGC CTGATGGGCG CCGAGGTGAT CCCGGTCACC
TCAGGCTCAG CCACCTTGAA AGATGCCTGT AACGAGGCGA TGCGCGACTG GTCTGCCAGT
TATGACAAGG CTCACTACCT GCTAGGCACC GCCGCCGGTC CACATCCCTT CCCCACCATA
GTGCGCGAAT TCCAGCGCAT GATTGGCGAA GAGACCAAGG CGCAGATCCT AGAGCGTGAG
GGTCGTCTGC CCGACGCGGT GATCGCCTGT GTTGGCGGCG GTTCAAATGC CATCGGTATG
TTTGCCGACT TTATCGACGA GCCTTCGGTA AAGCTTATCG GTGTCGAGCC CGCAGGACTC
GGCATAGATA CCCCTAAACA TGGCGCGCCG CTCAAGCACG GCAAGACGGG GATCTTCTTC
GGCATGAAGG CGCCGCTAAT GCAAGATAAA GAGGGCCAAA TTGAGGAGTC TTACTCCATC
TCGGCAGGCT TGGACTTCCC GTCAGTGGGG CCACAGCACG CCCATCTGGC GGCGACCGGT
CGCGCCACCT ATGAGTCGGC CACAGATGAC GAGGCCTTAG CGGCCTTCCA GCTGCTGGCC
CGCAGCGAGG GGATCATCCC GGCACTGGAG TCGGCCCATG CCCTAGCCTA TGCCATCAAG
CTGGCCGAGG CCGCTACCGA GGAGACGCTA TTGGTGGTCA ACCTCTCAGG CCGCGGCGAC
AAGGATATCT TCACCGTCGC CGACATCTTA GAAAAACAAC AAGCAAACAA CGAGGAGAGC
GGCAATGAGT AA
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| Protein sequence | MMTKLDPYFG EYGGMFVPQI LMPALKQLEA AFVDAQNDPS FQAEFTDLLK NYAGRPTALT
LTRNLSPNPL VKIYLKREDL LHGGAHKTNQ VLGQALLAKR MGKKEIIAET GAGQHGVATA
LACALLGLKC KVYMGAKDVE RQSPNVFRMR LMGAEVIPVT SGSATLKDAC NEAMRDWSAS
YDKAHYLLGT AAGPHPFPTI VREFQRMIGE ETKAQILERE GRLPDAVIAC VGGGSNAIGM
FADFIDEPSV KLIGVEPAGL GIDTPKHGAP LKHGKTGIFF GMKAPLMQDK EGQIEESYSI
SAGLDFPSVG PQHAHLAATG RATYESATDD EALAAFQLLA RSEGIIPALE SAHALAYAIK
LAEAATEETL LVVNLSGRGD KDIFTVADIL EKQQANNEES GNE
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