| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2224 |
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| Symbol | |
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| ID | 4923220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2594700 |
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| End bp | 2597396 |
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| Gene Length | 2697 bp |
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| Protein Length | 898 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163809 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001094349 |
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| Protein GI | 127513152 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.648811 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00821912 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAGCCAA TTTACAGAAT TTTGAGACTT TTTGGCGCAG ATCATTCTAT GGGTAAATCG
CTAGTTATTG TCGAATCACC GGCCAAAGCC AAGACTATTA ACAAATATCT CGGCAAAGAT
TACATCGTAA AATCGAGTGT GGGTCACATC CGTGATCTTC CTACCTCATC CTCCAGTGAC
GCCAGTTCGT CGACTAAATC GCCCGCCGAA GTGCGCAAGA TGTCCACCGA AGAGAAGGCT
AAATATAAGG CTGACAAAGC GAAGAAAGCC CTGGTTGCGC GTATGGGCGT CGACCCAGAG
CGAGGCTGGA AAGCCAAGTA TCAGACGCTT CCGGGCAAAG AGAAAGTTGT CAAAGAATTA
CAGTCACTTG CTGAAAATGC AGATCATATC TTCCTCGCAA CCGATTTGGA TAGAGAGGGG
GAGGCAATTG CATGGCATCT TCAAGAAGTG ATTGGTGGGG ATCCGGAGCG CTATCAGCGT
GTGGTCTTTA ACGAGATCAC CAAGAGCGCA ATTCAAGAGG CGTTCAGCCA TCCGTCTCAG
CTCAACACCA ATATGGTCAA TGCCCAGCAG GCGAGACGTT TTCTCGATCG CGTAGTGGGT
TTCATGGTGT CACCTCTGCT GTGGAAAAAA GTGGCCCGTG GCCTCTCTGC AGGGCGTGTG
CAATCGGTAG CAACGCGTCT TGTGGTCGAG CGCGAAGGCG AGATCAAGGC GTTCGTACCT
GAAGAGTTCT GGGACATTCA TGCCGAGCTG ACTACCCTAG GTAACGAAGG GCTCAAGATG
CAGGTGGCTA AGTTTAAGGG GGATAACTTT AACCCTGTAA ACGAAGCGCA GGCCATGGTT
GCGGTAAACG CACTAAAAGA CAGCAAGTAC CAGGTTTCTA GCCGTGAAGT CAAAGCGACT
TCTAGTAAGC CCTCGGCGCC CTTCATTACC TCGACGCTTC AGCAGGCGGC CAGTACCCGT
CTCGGCTTTG GCGTGAAGAA GACCATGATG ATGGCCCAGC GTCTCTATGA GGCGGGTCAT
ATCACCTATA TGCGTACCGA CTCGACCAAT CTGAGTCAGG AAGCCCTCGA CAGTGTGCGT
GACATGATCG GCAAGGAGTA TGGCGATAAG TATCTGCCCG ATGCGCCGAT CCGTTATGGC
AGCAAAGAGG GAGCACAGGA AGCTCACGAA GCGATTCGTC CGTCCGATGT GAACGTTAGT
GCCACCAGCC TTAGCGATAT GGAAAGAGAT GCCCAGCGTC TCTATGAGTT GATCTGGCGC
CAGTTTGTTG CCTGTCAGAT GACCCCAGCC AAATATGATG CGACGCGTTT GACCGTGACC
GCAGGGGATT ACGAACTCAA GGCCAGTGGC CGTACCCTTA AGTTTGACGG TTGGACTCGG
GTTCAGACCG CGCTTAAGAA GAAAAACGAG GAAGACAACA CGCTGCCGAT GGTTGCCGAA
GGCGATGTGC TGGCATTAGA AGAGTTGTTA CCTAAGCAGC ACTTCACTAA ACCGCCCGCG
CGTTATAGCG AAGCATCACT GGTGAAAGAG CTTGAGAAGC GTGGCATTGG TCGTCCATCG
ACCTATGCGA CCATCATCTC GACCATTCAA GACCGTGGCT ATGTGAAGGT TGAGAATCGT
CGGTTCTACG CCGAGAAGAT GGGTGAGATC GTTAGCGAGA GCCTCATCGG CAGCTTCGAA
GAGCTGATGA GTTACGACTT TACCGCCGGC ATGGAGCAGA CCCTAGATAA CGTGGCTCAG
GGCCAGCTCG AATGGAAGAA GGTGCTGGAT AACTTCTATA AAGGCTTGAC CGCTCAGCTT
GAAAAGGCCG AGCTACCGCC AGAAGAGGGC GGCATGCGCC CTAACGAGAT GGTGCTGACC
GATATCGCCT GTCCCACCTG TGGACGCCCA ATGGGCATTC GCACCGGTAC TACCGGCGTG
TTCCTGGGCT GTTCAGGTTA TGCCTTGCCA CCGAAAGAGC GCTGTAAGAC GACCATGAAC
CTGACGCCGG GCGAAGAGGC CGTCAGCGAG AACAGCGAAG ATGCCGAAAC CGATGCACTG
CGCGCCAAGC ACAGATGTGA TGTTTGCGGC ACGGCCATGG ATAGCTATCT TATCGATGAG
AAGCGCAAGC TGCATGTGTG TGGTAATAAC CCCATCTGCG GCGGCTACGA AGTCGAGCAA
GGGCAGTTTA AGATCAAGGG TTACGAAGGG CCGATTATCG AATGCGACCG CTGTGGCAAC
GATATGGAGC TGAAGAATGG CCGTTTCGGT AAGTATTTTG GTTGTACCAA CAGTGAGTGT
AAGAATACGC GTAAACTGTT GAAAAATGGT GAAGTGGCTC CGCCGAAGGA AGATCCGATC
CACCTGCCAG AGCTGAAATG CACCAAGTCT GATGGCTATT TCGTGCTCAG AGACGGCGCC
GCAGGCATCT TCCTGGCCGC GAGCACCTTC CCTAAATCCC GTGAAACCCG CGCGCCTCTG
GTGGAAGAGC TGGTGAAGTA CCGTGAGCTC TTATGGCCCA AGTATCAATA TTTAGCCGAT
GCCCCTGTAG CGGATGAAGA CGGTAATAAG GCGGTTGTGC GCTTTAGCCG TAAGACCAAG
GAGCAGTATG TGGCAACCGA AATCGATGGT AAGGCGACCG GTTGGACGGC CAAGTTTGTC
GGCGGTAAGT GGGTAAGCGA AGCCAAGGCT AAGCCAAAGG CGAAGAAGAA AGCCTAA
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| Protein sequence | MEPIYRILRL FGADHSMGKS LVIVESPAKA KTINKYLGKD YIVKSSVGHI RDLPTSSSSD
ASSSTKSPAE VRKMSTEEKA KYKADKAKKA LVARMGVDPE RGWKAKYQTL PGKEKVVKEL
QSLAENADHI FLATDLDREG EAIAWHLQEV IGGDPERYQR VVFNEITKSA IQEAFSHPSQ
LNTNMVNAQQ ARRFLDRVVG FMVSPLLWKK VARGLSAGRV QSVATRLVVE REGEIKAFVP
EEFWDIHAEL TTLGNEGLKM QVAKFKGDNF NPVNEAQAMV AVNALKDSKY QVSSREVKAT
SSKPSAPFIT STLQQAASTR LGFGVKKTMM MAQRLYEAGH ITYMRTDSTN LSQEALDSVR
DMIGKEYGDK YLPDAPIRYG SKEGAQEAHE AIRPSDVNVS ATSLSDMERD AQRLYELIWR
QFVACQMTPA KYDATRLTVT AGDYELKASG RTLKFDGWTR VQTALKKKNE EDNTLPMVAE
GDVLALEELL PKQHFTKPPA RYSEASLVKE LEKRGIGRPS TYATIISTIQ DRGYVKVENR
RFYAEKMGEI VSESLIGSFE ELMSYDFTAG MEQTLDNVAQ GQLEWKKVLD NFYKGLTAQL
EKAELPPEEG GMRPNEMVLT DIACPTCGRP MGIRTGTTGV FLGCSGYALP PKERCKTTMN
LTPGEEAVSE NSEDAETDAL RAKHRCDVCG TAMDSYLIDE KRKLHVCGNN PICGGYEVEQ
GQFKIKGYEG PIIECDRCGN DMELKNGRFG KYFGCTNSEC KNTRKLLKNG EVAPPKEDPI
HLPELKCTKS DGYFVLRDGA AGIFLAASTF PKSRETRAPL VEELVKYREL LWPKYQYLAD
APVADEDGNK AVVRFSRKTK EQYVATEIDG KATGWTAKFV GGKWVSEAKA KPKAKKKA
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