| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2121 |
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| Symbol | |
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| ID | 4923487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2457561 |
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| End bp | 2458919 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163706 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001094246 |
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| Protein GI | 127513049 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGATCA ATACCCGGTT GAAATTGTTG CTCTTTATCA GCCTTTTTCT GACAACTACC
ATACTGTTAA CCTTTGCCGG GCTGAAACAC ATACAGCAGG AGAACCTGCA GCAGCTTTCC
CATATCATGC AGCTAGAAAG CAGCATAGAT GTGCTCAGAA GCCGGCTCTG GGCCCTGCAG
GAGTTTCAGG ATGAGGAGGT GTTGACCCAG ACCCTCAACG CCCATCAACA GCTCAAGGCC
AAACTTGCCG AGGCGCAGTT CTTAGCGCCC GCAACCAAAG TATTAACCAC CAATTTGAAT
CGTCAGGCAG ACAGCCTGGC CGCACTGCTC AAACTCACCC AGCAGCATAT GAGCTCGCCC
CCACAACGGG GCATCACCTC CGCCCGCGGC ATGTTAACCA CCCGGTTTAA CATCACGATA
CAGTCGATGA GTGAAGATCT CACCAGTCTG CAGCGCCTGG TGATCGACAG CCTGGCCGAA
CAGCAATCGC AGATCCTCTC GTCCACGATT CTCTTCCTGC TGGCAGGCTC AGTCATCTCG
CTGCTGGTTA CCATGTCGAC TCTCAAAGCG TTCAGAGAGA GCCTGCACCG CATGAAGATG
GGGATCAGCA AACTCAGCCA GGGGGATCTG GACAGTCATA TCGAGATAGT CCACCAGAAC
GAGCTAGCGA TACTGGCGCA GAAATTTAAC ACCATGACCC ACAAGCTCAA GGAGACCACC
ATACGCAAGG AGGCACTTCA GGGCGAGGTG GCGGCGCAAA CCAAGCAACT CAAGCGCCAG
ACTCAGAAGC TCAAGTATGT GGCGGAACAC GACGATCTCA CCGGCCTCTA TTCCCGCAGC
GCCTTCGAGC GCCAGATAGA TACCGCCATC GCCCGCTGTC AGCGCACCCA GATGCACGCG
GCCATGTTGT TTATCGATCT GGATAAATTT AAGCAGGTTA ACGACAGCCT GGGCCATGAC
AATGGCGACA AGGTGCTGTC GACGGCGGCG AGGCGTATGC AGAGTGCGGT GCGAAGCTCA
GACATCTGTG GCCGCCTGGG GGGAGATGAG TTCGTGGTCT GGCTCGAACC CATCAACGAC
ATCGAGGAGG TGACCATAGT GATCGATAAG ATCATACGTC AGATCTCACC GCCTATCGTC
TGTGGCCGCA CCACGGTTTC ACTCACCGTC AGCATAGGCG TAGCCATGTA TCCGCGCGAC
GAACTCACCC GCCTCAGCCT GATCAAAGTC GCCGACGACA ACATGTACCA GGCCAAGCAG
GTTAAGGGGA ACAGCCACCG CTTTACCGAG CAGGTAGCCC GCCAGGTTGA CAAGCGCCAG
GTAGATGAAA GCCAAATAGA TGAAACTCAG GTTGGCTAG
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| Protein sequence | MMINTRLKLL LFISLFLTTT ILLTFAGLKH IQQENLQQLS HIMQLESSID VLRSRLWALQ
EFQDEEVLTQ TLNAHQQLKA KLAEAQFLAP ATKVLTTNLN RQADSLAALL KLTQQHMSSP
PQRGITSARG MLTTRFNITI QSMSEDLTSL QRLVIDSLAE QQSQILSSTI LFLLAGSVIS
LLVTMSTLKA FRESLHRMKM GISKLSQGDL DSHIEIVHQN ELAILAQKFN TMTHKLKETT
IRKEALQGEV AAQTKQLKRQ TQKLKYVAEH DDLTGLYSRS AFERQIDTAI ARCQRTQMHA
AMLFIDLDKF KQVNDSLGHD NGDKVLSTAA RRMQSAVRSS DICGRLGGDE FVVWLEPIND
IEEVTIVIDK IIRQISPPIV CGRTTVSLTV SIGVAMYPRD ELTRLSLIKV ADDNMYQAKQ
VKGNSHRFTE QVARQVDKRQ VDESQIDETQ VG
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