| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2098 |
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| Symbol | |
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| ID | 4923634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2426803 |
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| End bp | 2427513 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163680 |
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| Product | hemolysin III family channel protein |
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| Protein accession | YP_001094223 |
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| Protein GI | 127513026 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACCAC AGTCCGTGCC GCCACAAACC ATACAGCCCC ATGAGATCGG CCTGAATAGT
CAGCCCAGCT TTGCTGCTAC GGCCGCTCCC TATAGCCGCG CAGAAGAGCT GGCAAACGCC
CTCAGCCATG GCCTGGGTGT GATTGCAGGT ATTCTGGCGC TTGCGTTTTC ACTGCATAAG
GGATGGGACA GGCTCACCAA TCTACAACTG GGCGGATTGG CGCTTTACTG TTTGAGCATC
ATACTCCTGT TTCTCTGCTC AACGCTCTAT CACAGCGTCT CGGCACCTAA GTTAAAGCAT
AAACTCAAGA TAGCCGATCA CTGCGCCATC TATCTGTTGA TCGCCGGCAC CTACACGCCG
CTGATGCAGA TCCTGCTCGA CAGTGTCGAG GCCGATGCCA TTCTCATCGC CATCTGGAGT
CTTGCCCTAG GCGGGATCCT GTTCAAGACA CTGTTTATTC ACCGCTTCAA GATCTTTAGC
CTGGTGCTCT ATCTGGTGAT GGGTTGGTTG TGTGTCATAG TGATGAAGCA GTTGCTTGCA
GCCATGACGC CACTGGGCTT TCAGCTACTG CTGGCGGGCG GGATCTTCTA CAGCACCGGG
GTGATCTTCT ATGTGGGTAA ACGCATTCCC TATAATCACG CCATCTGGCA TCTGTTTGTC
CTCGCCGGCG CCCTCAGCCA CTTCCTATGC GTCTACCTGA CGGTGATCTA A
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| Protein sequence | MPPQSVPPQT IQPHEIGLNS QPSFAATAAP YSRAEELANA LSHGLGVIAG ILALAFSLHK
GWDRLTNLQL GGLALYCLSI ILLFLCSTLY HSVSAPKLKH KLKIADHCAI YLLIAGTYTP
LMQILLDSVE ADAILIAIWS LALGGILFKT LFIHRFKIFS LVLYLVMGWL CVIVMKQLLA
AMTPLGFQLL LAGGIFYSTG VIFYVGKRIP YNHAIWHLFV LAGALSHFLC VYLTVI
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