| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2008 |
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| Symbol | |
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| ID | 4924259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2320455 |
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| End bp | 2321150 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163580 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001094133 |
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| Protein GI | 127512936 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.110275 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAAGC ATGTGGTGAT CACAGGGGCA AATCGCGGGA TAGGCTTAGG CTTTGTCAGG
CATTATCTGG CTAAAGGCGA TAGAGTGAGT GCCTGTTGCA GGCAGCCCGC TCAGGCAAGT
GCCTTGATCC AACTAGCGGA GATCCATGCC AATCTTAACA TTATTCAGCT GGATGTTACC
GATGATGTCT CGGTGCACGC CTTACCCCAG CATTTAAATG ACGCGGCCAT CGATATCTTG
ATCAATAACG CTGGCTACTA TGGCCCTAAG GGGATAGGTT TCGGTCAGCT TAGGGCGGCA
GAGTGGCAGA AGGTGCTTGC GGTTAATACC ATAGCCCCCA TCATGGTGAC CCAGATCTGC
TATCCCATGT TGCAAAAGGC GACTAATGCC AAGGTGATCT GTATCTCTTC AAAGATGGGG
AGCATGGCGG ATAACCAGAG TGGCGGCAGC TATCTCTATC GCTCATCAAA GGCGGGACTC
AACGCGGCGC TTAAGAGCCT GGCTATCGAC TTAAGTAGCG AGGAGATCTA CTGCCTAGCG
TTTCATCCTG GTTGGGTACA GACAGACATG GGCGGGCCCA ACGCGCTGAT CACAGTAAAT
GAGGCTGTAG ATCAGATGGC TAGATGTATC GAAAACCTGG ACGCAACTCA GTCCGGACAG
TTTTTAAACT TCGATGGCCA GCAGATCCCT TGGTAG
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| Protein sequence | MTKHVVITGA NRGIGLGFVR HYLAKGDRVS ACCRQPAQAS ALIQLAEIHA NLNIIQLDVT
DDVSVHALPQ HLNDAAIDIL INNAGYYGPK GIGFGQLRAA EWQKVLAVNT IAPIMVTQIC
YPMLQKATNA KVICISSKMG SMADNQSGGS YLYRSSKAGL NAALKSLAID LSSEEIYCLA
FHPGWVQTDM GGPNALITVN EAVDQMARCI ENLDATQSGQ FLNFDGQQIP W
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