| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1958 |
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| Symbol | |
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| ID | 4920991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2263263 |
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| End bp | 2263958 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163527 |
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| Product | orotidine 5'-phosphate decarboxylase |
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| Protein accession | YP_001094083 |
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| Protein GI | 127512886 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
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| TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000470134 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000364727 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGCAACA AACCTATTAT AGTGGCGCTA GATTACGATA ATAAATCCGA AGCTTTGCAG
CTCATCGATC AGCTAGACCC CAATATGTGC CGCCTCAAAA TAGGCAAAGA GATGTTCACC
CTCTTTGGCC CTGAATTGGT TAAAGAGATC CACAGTCGCG ACTTTGACCT TTTCCTGGAT
CTAAAATTCC ACGACATTCC GAACACAGTC GCCAAGGCCG TCGCTGCTGC GGCAGAGCTA
GGGGTGTGGA TGACTAACGT GCATGCCAGC GGTGGACTGG CCATGATGCA GGCAGCTCGC
GAGGCGCTGC TTCCATATGG CGACAAGGCC CCGCTGCTGA TCGCCGTGAC GGTACTAACC
TCAATGAGCG ATGAAGAGCT CGAGCTGCTT GGCATCAATG TGCCGGCGGC CGAGCATGTT
AAGCGTCTGG CAAGCCTCAC CAAACAGGCA GGACTGAACG GTATCGTCTG TTCGGCCCAG
GAAGCCAGCA TGCTAAAGGC CGAATTTGGC GCCGACTTTA AGTTGGTTAC GCCGGGTATT
CGCCCAGCCG GCAGCGACAA GGGGGATCAG CACCGCGTGA TGACGCCGAC GCAGGCGCTG
GCAGCGGGTT CCGATTACCT GGTGATTGGC CGTCCTATCA CCAAGGCGGC TAATCCACTC
GCGGCATTGA CCGAGATCCA TGCATCGCTT AAATAG
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| Protein sequence | MSNKPIIVAL DYDNKSEALQ LIDQLDPNMC RLKIGKEMFT LFGPELVKEI HSRDFDLFLD
LKFHDIPNTV AKAVAAAAEL GVWMTNVHAS GGLAMMQAAR EALLPYGDKA PLLIAVTVLT
SMSDEELELL GINVPAAEHV KRLASLTKQA GLNGIVCSAQ EASMLKAEFG ADFKLVTPGI
RPAGSDKGDQ HRVMTPTQAL AAGSDYLVIG RPITKAANPL AALTEIHASL K
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