| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1925 |
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| Symbol | |
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| ID | 4921253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2222531 |
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| End bp | 2223709 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163493 |
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| Product | 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) |
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| Protein accession | YP_001094050 |
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| Protein GI | 127512853 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.785797 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00118478 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCAACG CAACGAGCAA TACAGAGACT GTCCATCGTG TCAGTTTTCT CGATAAGGAT
TCATTATCGA TCCCGATCCT GAAGATCCTT CAAGCCGACG GTACCACCTT TGAAAATGCT
GTGTTACCCG TGATCGATCA GGATTTGGCT GCCAAAATTT ATGATACTTG TGTGTTCACA
CGAGTACTCG ATGAGCGCAT GTTAGCCGCT CAGCGTCAGG GACGGATCAG CTTCTACATG
ACCTGTACCG GTGAAGAAGC CGCCGTGGTC GGCAGTGTTG CCGCCCTGGA TCAAGACGAT
GTTATTTTAG CCCAGTACCG TGAACACGCG GCGATTCGCT ATCGTGGCTT CACCACTGAG
CAGTTTATGA ACCAGATGTT CAGTAACGAG AAAGATCTGG GTAAGGGCCG TCAGATGCCG
ATCCACTACG GCTGTGAGGC GCTCAATTAC CAGACCATCT CATCGCCGTT GGCTACTCAG
ATCCCACAGG CGACGGGTGT TGGCTATAGC CTCAAGATGC AGGGCAAACG TAACGTTGCC
ATCTGCTACT TCGGTGAAGG CGCCGCCTCA GAGGGTGATT TCCACGCCGG TCTAAACATG
GCTGCAGTGC TGAACTCTCC AGTTATCTTC TTCTGTCGTA ACAATGGTTA CGCCATCTCG
ACCCCGACCA ACGAGCAATT TGCCGGTAAC GGTATCGCCA GTCGTGGTGT GGGCTATGGC
ATGCATACCA TTCGCGTGGA CGGTAACGAC ATGCTGGCAG TAATGGCCGC GACCCAGCAG
GCAAGAGCCT ATGCGTTGGA GCACAACAAG CCTGTGCTGA TCGAAGCCAT GACCTATCGT
CTTGGCGCTC ACTCCTCTTC GGACGACCCA TCTGGTTACC GTTCTAAGGA TGAAGAGGCC
AAGTGGCAGC AGCATGATCC GGTTAAGCGC TTCAAACTGT GGTTGATCAA CAAAGGCTGG
CTCGCCGAGA GCGACGATGC GGCCCTGTAT GAGAAGTACC GTGAAGAGGT GCTGGCCGCA
GTGAAGGTTG CCGAGAAGCT ACCCGCACCT AAGATTGACG AGATCATCGA AGATGTCCTC
GACGAGCCGA CGCCCAGACT CAAGCAGCAG CTGACCGAGC TTAAGCAGCA CATCAAGAAA
TATCCTGATT CCTATCCACG CAGCGCAGGG AGAGATTAA
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| Protein sequence | MSNATSNTET VHRVSFLDKD SLSIPILKIL QADGTTFENA VLPVIDQDLA AKIYDTCVFT
RVLDERMLAA QRQGRISFYM TCTGEEAAVV GSVAALDQDD VILAQYREHA AIRYRGFTTE
QFMNQMFSNE KDLGKGRQMP IHYGCEALNY QTISSPLATQ IPQATGVGYS LKMQGKRNVA
ICYFGEGAAS EGDFHAGLNM AAVLNSPVIF FCRNNGYAIS TPTNEQFAGN GIASRGVGYG
MHTIRVDGND MLAVMAATQQ ARAYALEHNK PVLIEAMTYR LGAHSSSDDP SGYRSKDEEA
KWQQHDPVKR FKLWLINKGW LAESDDAALY EKYREEVLAA VKVAEKLPAP KIDEIIEDVL
DEPTPRLKQQ LTELKQHIKK YPDSYPRSAG RD
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