| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1815 |
|---|
| Symbol | |
|---|
| ID | 4924378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2087345 |
|---|
| End bp | 2089198 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640163380 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093940 |
|---|
| Protein GI | 127512743 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000383708 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTGA AGTTTGATAG AGCCATCTCT TTAGTCGCAG TCGGAGTGAT CACCGCGCTG
CAGACGGCTC ACGCTGCACC TGTCTATGAG ATCCAGAACA TTCAAGACTA TGATCTTAAT
GGTACCTTAG AGTCGACCAT CAACGGCTAC GGCATGTTTG TTAATCAGCA AGATAAGATG
GTGGGGATCT CTAAGGGTAA GAAGAAGCTC GAGGTCGACG ACGAGACTGG TGGCGCCATC
GATATCGAAG ATGGTATTCC GCCTGAGCAA CTAGTGTCTT ACTCCATTAA CGCGCCCATT
ATTGCTAATA ACTTTACCTT TTCCGCCGAT GGCAATGGTG CCAGCGGTAG CTGGATCCCA
ACTTTCGATT CGGTTTTCGG CACTACCCAT CCGAAAGATA CCGATGAAGA CCAGCCGGAG
ACCATTAACT CGATCAATGC CTATTACTAT GGCATTAACA ATAATGGGAT CAAGGTAGGT
ACCTATACCG CGCCTGAGCA GAAAACCGAG TTTACTGGCG AGCGCAACGA CAGTAACCAA
GATCAGGAAT ATTGGTACTA CCGTGAATTT GAGGAGCGTG GCTTCCTCAA GACTGCAGAA
GGGACAGATA TCGCCTTGGT ACCACCCTAT ACCGTTTATA GCAAAGACGA TACGGATGTA
GTTGTGGGCG GAGTTTCTGT GGCGGCGGCC ATCAACGACA ATAACCTGAT CACAGGCTAT
GCGACCACAG AACTGGCCAA GACGAGTCAA ACCCGTGTCG ATAACTGTAT CAGCGGTGAG
ACCTATCCAA TCGATGTCTG TGTGCAGAGG GATCAATATC CAGATAGCAA CAATGCGCGC
CGTATTCTTT ATCAGACACG CGCCTTTGTG TGGCAGTTCG ATGGTACGGA CGTGACGCCG
ACCGAGTTAC CGCTGGGACT TGAGTCGACT TCAGACAGTG TGTTCACCGC TCAGGGGATT
GGTTTGAACA GTGAGGGTGT GATTGCTGGT CGCTCTCATG TATATCGTAA CGATAACAAG
GATAAGCTGG CGTTCGATGC CGCCTATTGG AAGAAAGATG CTCAAGGTGA TTACCAATAT
CACTGGGTGA AGATGACCAA CGATCAGCTG TCATCTGTTG CCTATGACAT CAACGACAAT
GGCATTCTGG TGGGCAGCTA CCGCCGCTAC ATCGAAGGCT ACCTGCGTGA CAAGTTCTTC
TATCTGGACA CCAACGCCGA AGATCCAACC TTCGTGACGC CGAATGATTT TTATGAGGTG
ATGTCTGATC GCAGCTCGCG TCCACGTGAT ATCAACAACA AAGATCAGGT CGTAGGTTTC
GTCGAGGTTA CCAGCGAGAA AGAGAAGCCA CGTATGAAGG GTGCCTTCCT GTATGACAAG
GCGAGTGACG AGTTTAACGT TATCGACGAT CTCCTTGTGT GTGAGTCTAA GGGTTATGTT
AAAGACGATG CCGGCAAGTG GACCCGTAAC CAGGTCGAGG TGGTCGATGG TGATGGCAAG
ACCCTTTACT ATGATAGCGA GATCCGCATC GTAGAAGCCA ACAGCATTAA CGATGATGGC
ACCATAGTGG GCACAGCCTT CATTCGTAAG CCTTCTTATC AGTATGATGA GAAGGGTAAT
CTAATAATTG GTGAGAACGG TAAGCCATTA TTCTCACTCA ATGCCAATGG TCAGCCGGTA
ACCGCTTATC TGCCACGTAT GGTGGTGCTA AAGCCGACCA CATCGGGTAC GGCCTGTGAA
GTTGAAGAGA CAGATAACTC GGGTAATGGT AAATATGAGC GTAAAGGCGC CGCCAGTTTT
GCCTGGTTGT TGCTGCTGCC ATTGGTTTGG TTGAGACGTC GTGTTCAGGC CTAA
|
|---|
| Protein sequence | MKLKFDRAIS LVAVGVITAL QTAHAAPVYE IQNIQDYDLN GTLESTINGY GMFVNQQDKM
VGISKGKKKL EVDDETGGAI DIEDGIPPEQ LVSYSINAPI IANNFTFSAD GNGASGSWIP
TFDSVFGTTH PKDTDEDQPE TINSINAYYY GINNNGIKVG TYTAPEQKTE FTGERNDSNQ
DQEYWYYREF EERGFLKTAE GTDIALVPPY TVYSKDDTDV VVGGVSVAAA INDNNLITGY
ATTELAKTSQ TRVDNCISGE TYPIDVCVQR DQYPDSNNAR RILYQTRAFV WQFDGTDVTP
TELPLGLEST SDSVFTAQGI GLNSEGVIAG RSHVYRNDNK DKLAFDAAYW KKDAQGDYQY
HWVKMTNDQL SSVAYDINDN GILVGSYRRY IEGYLRDKFF YLDTNAEDPT FVTPNDFYEV
MSDRSSRPRD INNKDQVVGF VEVTSEKEKP RMKGAFLYDK ASDEFNVIDD LLVCESKGYV
KDDAGKWTRN QVEVVDGDGK TLYYDSEIRI VEANSINDDG TIVGTAFIRK PSYQYDEKGN
LIIGENGKPL FSLNANGQPV TAYLPRMVVL KPTTSGTACE VEETDNSGNG KYERKGAASF
AWLLLLPLVW LRRRVQA
|
|---|
| |