Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1716 |
Symbol | |
ID | 4922364 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1969686 |
End bp | 1970807 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640163278 |
Product | 3-beta hydroxysteroid dehydrogenase/isomerase |
Protein accession | YP_001093842 |
Protein GI | 127512645 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCATCA CCAAGCATTC CAATCACACA GACAACGTAA ATCTGCTTCC TGAAGAGCTT GAGGCGTTAA CTCAGCTGGC GGGTCTTAGC CGCCATGCCT TGGTAACCGG CGCCGGCGGC TTTCTGGGTA AGGCGATTTG TCAGCGACTC ATAGCGGCGG GCATTGCCGT GACAGGCTTT GCCCGGGGGC ATTATCCCGA GCTCGAAGCC ATGGGCGTTA ACATGGTGAG CGGCGATATC TGCGATCTCG AGTCCGTAAC CAATGCCATG GCCGGCTGCG ACCTGGTGTT TCATGTGGCC TCTAAGGCCG GAGTATGGGG CAGCAAGGAG AGCTATTTTG CCCCCAATGT GCAGGGCTGC GACAACCTGC TTAAGGCAGC TGCCGCCCAT GATATAGACA GTTTCGTCTA TACCAGTACC CCGAGCGTGA CCTTTGCCGG TGAAGATGAA TCTGGCATAG ACGAGCGCGC GCCCTATGCC AGTCGTTTCC TTAACTATTA TGGCGAGTCC AAGGCGATCG CCGAGCAGAG AGTGACGGCC GCAAACAGCA CCTCATTGTC GAGTGCCAAT TCTCCCTCTG AAGGCAAGCT AAATACCGTA TCCCTTAGGC CCCATCTCAT CTGGGGGCCG GAAGATCCTC ATCTGGTGCC CAGGGTGATT GCCCGCGCCC GAGCCGGTAA GCTCAAGTTA GTGGGTAAGG TCGATAAGCT GGTGGATACC ATCTATGTCG GCAACGCGGC CTACGCCCAT ATTCTGGCGG CCCTGACCCT CAAGCAAAAC CCGCAGCAGT GCGCCGGAAA GTGTTACTTT TTGAGTAACG ATGAGCCGAT CACCATGAAG GTTATACTCA ACAAGATCTT GGCCTGTGCC GAGCTGCCCA AGGTCGAGAA GCGGGTACCC GCCAGCGTCG CCTATCTGGC CGGCGCCCTG TTAGAAGGGG TCTATGGCCT GCTGGGCAAA TGCGATGAGC CCATCATGAC ACGCTTCGTG GCCAGACAGC TCTCTACCTG TCACTATTTC GATATCTCCG CGGCCAAGCG CGACCTCAAC TATCGCCCCT TGGTATCGAT CGATGAGGGG ATGGTGCAGT TAAGCAACTG GCTGAAGCAG GAAAAAGTAT AA
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Protein sequence | MSITKHSNHT DNVNLLPEEL EALTQLAGLS RHALVTGAGG FLGKAICQRL IAAGIAVTGF ARGHYPELEA MGVNMVSGDI CDLESVTNAM AGCDLVFHVA SKAGVWGSKE SYFAPNVQGC DNLLKAAAAH DIDSFVYTST PSVTFAGEDE SGIDERAPYA SRFLNYYGES KAIAEQRVTA ANSTSLSSAN SPSEGKLNTV SLRPHLIWGP EDPHLVPRVI ARARAGKLKL VGKVDKLVDT IYVGNAAYAH ILAALTLKQN PQQCAGKCYF LSNDEPITMK VILNKILACA ELPKVEKRVP ASVAYLAGAL LEGVYGLLGK CDEPIMTRFV ARQLSTCHYF DISAAKRDLN YRPLVSIDEG MVQLSNWLKQ EKV
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