| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1596 |
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| Symbol | |
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| ID | 4922025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1828988 |
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| End bp | 1830361 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163158 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001093722 |
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| Protein GI | 127512525 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0151109 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0129356 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGATC TCGAAGAAGC GCTTGCCTTG CTCGCCGCCC CCTGTATCGA CGAGCGATTT
TTTCAGCGAG CCCTAAAAGC ACTCGCGCTG GTGACTCAGT GTCGCTGGGC GGCCTTCGCC
CGCCCCTCGA TTCATCGCGG GAAAATAGAG GTGGTCGCCT TTTGCGACGT GAAACAAACC
ATTCCCGGGT TTGAATTTGA TCTTATGGGC TCCCCCTGTG AAGCCATCTA TCAGATGCGC
TACCCCAATA CCCATCTCTT GTATGCAAAT GATCTGCAGC AGCGCTTTCC CGACTTTCAG
CTCATCAAAG ATCTCGGCGC GGTCAGCTAC CAGGCCGAAT TGATCCTGGA CGACGAAGGC
GGCCCGATTG GGCATATCTT GGTCATGGAT ACCCTCCCCC AGCGGGAAAA CACTAAGTCG
AGGGAGTTTT TCCGGCTACT CGCCCAGCGG ATCGGTATCG AGTACAAGCG CCTGCTGATG
TCGAGGGAAT TGTCGGTGCA CAAGGAGATG ATCGCATCGA CCCACCACAT GATGTCCTTC
GTCGGCCTCG ACTATCGCTA CCATGTGGTG TCTAAAGGCT ATGAGCACCT GCTTAACTGT
GATGCGAGTG AGATCATCGG CAAGCATGCC AGCGAGATCC ACGGCAAGGC GATATTCGAG
ACCCACCTTA AGCCACTGCT AGACAGATCC TTCGCGGGAG AGTCGATAAA CACCCAGACC
CGCATCCATC CCCCTTCTGT GTCTGAGCCG CAATACCTCA ACGTCCACCA CAATCCGCAC
CAGGATGAAA ATGGTCAGAT AAGCGGGGTC ATAGTCTCGG CTCATAACAT TACCGAGCTG
CATAAGGCAA AAGAGCAAAG CGAATATCTG GCCTTTCATG ACTCGCTGAC CCAGCTGCCT
AATCGTCTGG CGTTGTTTAA TCACTTCGCC GAGATGCTCT CTAGCCAACC CCAAAGCCAA
GCAGAACTCG CCGTGCTCTA TCTGGATCTG GATGATTTCA AGCTAATTAA CGACAACTAC
AACCACCTGG TTGGTGACAA GGTACTGCAG AAAGTTGCCG AGATCTTAAG GAAGGTCTGC
CCCGAGGCTG AGATGGTGGC GCGGATCGGC GGCGATGAGT TTATCATTTT GCATAGCTTC
GACGCTCAAA ATGAGAGCGA CAAAAGCCGC GCGCTCTCCA CACTCTGCCT AAGCTTGAAT
CAGATGCTCG ACGACGGCAT TAGGCATGAG GGAGATCATC TTAGGCTCGC AGCCAGTATC
GGCTGTCACT GGGTCGAGCC GGATCAGAGA GATGTCTCGG CGCTTATCTG TCTGGCGGAC
AAATCAATGT ACCGCAACAA GCGCCGTAAG CGGCTTAATG AGGCTCGCCA GTGA
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| Protein sequence | MTDLEEALAL LAAPCIDERF FQRALKALAL VTQCRWAAFA RPSIHRGKIE VVAFCDVKQT
IPGFEFDLMG SPCEAIYQMR YPNTHLLYAN DLQQRFPDFQ LIKDLGAVSY QAELILDDEG
GPIGHILVMD TLPQRENTKS REFFRLLAQR IGIEYKRLLM SRELSVHKEM IASTHHMMSF
VGLDYRYHVV SKGYEHLLNC DASEIIGKHA SEIHGKAIFE THLKPLLDRS FAGESINTQT
RIHPPSVSEP QYLNVHHNPH QDENGQISGV IVSAHNITEL HKAKEQSEYL AFHDSLTQLP
NRLALFNHFA EMLSSQPQSQ AELAVLYLDL DDFKLINDNY NHLVGDKVLQ KVAEILRKVC
PEAEMVARIG GDEFIILHSF DAQNESDKSR ALSTLCLSLN QMLDDGIRHE GDHLRLAASI
GCHWVEPDQR DVSALICLAD KSMYRNKRRK RLNEARQ
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