| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1593 |
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| Symbol | |
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| ID | 4921198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1823406 |
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| End bp | 1826792 |
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| Gene Length | 3387 bp |
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| Protein Length | 1128 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163155 |
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| Product | ribonuclease |
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| Protein accession | YP_001093719 |
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| Protein GI | 127512522 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0247639 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGGA TGTTAATTAA TGCGACTCAG TCTGAAGAGT TGCGCGTTGC CCTCGTTGAT
GGGCAACAAC TGTACGATCT CGACATTGAG AGTCCTGGTC ACGAGCAGAA GAAAGCCAAC
ATCTACAAGG GTAAAATCAC CCGCGTAGAA CCCTCTCTCG AAGCGGCTTT CGTCGACTAT
GGCGCCGAGC GTCATGGTTT CCTTCCCCTC AAAGAAATTG CACGCGAATA CTTCCCTAAA
GGTTACTCTT TCCAAGGCCG TCCTAACATC AAAGAGGTGG TTAAAGAGGG TCAGGAAGTT
ATAGTACAGA TTGATAAAGA AGAGCGTGGC AACAAGGGCG CGGCCCTGAC CACCTTCATC
AGTCTAGCAG GCTCTTACCT GGTGCTGATG CCAAACAACC CTCGCGCCGG CGGTATCTCT
CGCCGAATCG AAGGTGATGA GCGTACCGAG CTAAAAGCGG CCATGTCAGA GCTGGAAGTG
CCGCAAGGCA TGGGGCTTAT CGTGCGCACC GCCGGTGTAG GTAAAGACGC AGCCGAGCTG
AAATGGGACC TTAAGGTTCT CCAGCACCAC TGGGCTGCCA TCGAAGAAGC GGCGCAAAAC
CGCCCCGCAC CTTTCCTGAT CCATCAGGAA AGTAACGTTA TCGTACGTGC CATCCGCGAC
TACCTGCGCC GCGACGTGGG CGAAGTCCTG ATCGACCATC AGCGTATCTA TGAACAGGCT
AAGCAACACG TGGCTTTGGT GCGTCCAGAC TTTGTCGATC GTATCAAGCG CTACGAGGCG
GAAGTACCGC TGTTTACCCA TTTCCAGATT GAAACTCAGA TCGAATCGGC CTTCCAGCGT
GAAGTGCGTC TTCCTTCTGG TGGTTCTATC GTTATCGATC CAACCGAAGC ATTGACCTCA
ATCGATATCA ACTCGGCCCG TGCGACTAAG GGCGGCGATA TCGAAGAAAC TGCGCTCAAT
ACCAACCTTG AAGCGGCCGA CGAGATTGCT CGTCAGCTGC GTCTGCGAGA CTTGGGCGGC
CTGGTGGTTA TCGATTTCAT CGACATGACA CCGGTCAGAC ACCAACGCGA AGTCGAAAAC
AGAATGCGCG ACGCCGTGCA TCACGACAGA GCCCGTGTCC AACTAGGACG CATCTCTCGC
TTCGGTCTGA TGGAAATGTC GCGTCAGCGT CTGCGTCCGT CACTGGAAGA GTCTGCCGCG
CACCTGTGTC CACGCTGTCA TGGCCAAGGC ACCATTCGTG GTACCGAATC ACTGGCGCTC
TCTATCCTGC GTCTGATGGA AGAGGAAGCG ATCAAAGAGA ACACCTCTCA GATTGAAGCG
ATCGTCCCTG TCGATGTCGC CGCCTTCCTG CTCAACGAAA AGCGTAAAGC CATTCGTATC
ACAGAGCAGC GTCATGATGT CGAAGTCTAC GTGATCCCAG ATCCAAACAT GACGACACCT
GACTACCGTG TGACCCGTCA CCGCAAAGAC GATCAGATCA GCGAGTCAAG CTACAAGCTG
CTCGAGCAGC CTGAGTCTAA GCTCTACGAG CCGCGCAAAC TAGAGCGCGC CGCATCACCT
GAGCCAGCAC TGAAAGGCTT CTCGACGCCG GTTAAGGATG CGCCAACCCA GGCGGCTCCC
GCACCAGCCA AGCCAGCTGA AAAGGCTCAA GAGCCAGGTT TGATCGCCAA GCTATTTGCC
GCCATCGGCA AGCTGTTTGG TGGTGAGCCA GAGCAGCCAA AGGAAGAGGT CAAGAAAGAG
CAGCCTCGTC GCAACGCGCA GAACCGTAAC AGTCGTCGCA ACAACCGTCG CAACGATACA
CGTAAGAGCC GCGACGAAGG CAAAGAGACA GACAACAAAC GCAGCCGCAG TGCCAAGCCT
GATGACGCGG ATAGCCGCAG TGCGAAGAGC CGTAACGAGA AACGCCAAAA GCGTGACCGT
GACGACAAGC CACAGAGTCA GAGCAAAGAC ACTGAAAGCC AAGCGCAGCA ACCAAAACAA
GAAGCCGCTC GCGAGCGTCG TCAACGCCGC AACATGCGCC GTAAGGTCCG CGTGCAGTCA
GAGCAGCAGC TCGCCGATGA GGCCGCACTC GCCATCGAAG TTGCCGAGAA GGCCAACGAC
GAGCAGGTAC AAGTGCCAGC TGCAGAAGCC ACTGCAGACG ATAAGCCACA GCGTCAGAAG
CGTCAGCCAC GTAAGAGCAA GCCTAAGCAG GATAAAGCCG ACAAGCTAGA GGAAGAGACT
CAAGCCGAGC AAGTCGCCGA TGAAGACACT GCCAGCGAGC AGCCAGCTGT CGAGACTCAA
GCCGCAAACG AGCCTAAAGA TACCGAAGTG ACAACACAAG TCGAAGCGCA TGCAGACGAA
GCTCAAGCTG AAGAGGCTAG TGCTCAACCA CAAGAGGGCG AGTCAGAAGG CAAACGCGAG
CCAAGAGAAG GCCAACGTCG TAGTCGTCGT AGCCCACGTC ATCTGCGCGC CGCCGGTCAA
CGTCGTCGCC GCGATGAAGA AGGCAATGGT GAAGTTAACA ATGGCGAGCC CGCCTTCATT
CCAAATGAGG TGGAAACTGC GCCTCTGCTG GGTGAGCAGC TAGAGCAAGA AGGCAGCGTT
GTTGAAGCCG TTAGCGAAGT ACAGGCAACT GCGACCGAGC AAGAAGCGGT AAAACAAGAG
GCTGACGAAG TAACTACAGT CGCTGAAACG ACTGTCACCG AAACGACTGT CACCGAAACC
ACAGTCGCTG AGGAAGCACC TGCTAAAGCG GCCGCCGAAG AAGCTTCTCA AGAAGAGAGC
AAGCCTAAGC CAAGACGTCG TGCACCTAAG GCCAAAGTCG CTTCTGAAGA GGAAACCTCT
GTAGAAGAAG CTCAGCAGAG CCTACCACTG GCAGGCGAGG CGAAAGCCAG TCTGAAAGAG
GAAGTTCAGG CGGAGCTGGA TCTAACCAGC ACACCTGAAG AGGTTAAGGC CAGCCAAGAA
GCGGCCCCTC AAGCAGAAGA CGTCGCTGCG CAGGCCGAAG AGCCAGCAGC AGTAGAAACT
GCGCCAGTCG AGACGCCTGA AGTCGAAACT GAAGCTAAGA CTGAAGCGCC TGCTGCCAAA
GAGAGCAGCG CCGCATCAGC CCCTATGGCA AAGCCTGCAG CCGTACCAGC CCCAACCGCT
AAGGTGAAAC CTGCAGCTAA AGTTGAGGCA ACGCCAGCAG AGGATAAGCC AGAAGAGACG
GCTAGCGACG AGGCTGAGAA GCCTGCGCCT AAGGCCACCA GCCGCTTCGG TTCCATGGTG
AGTTCTACCA TGACCAAACC TGAGGTAGAA GCCAGGGCGC TCGTCGACAC CCCATCGGGA
CGTCAATATG AAGCCACGGC AAAAGAAGCG TCGGCCGAGC CAGTGAAACG CGGTAACAGC
GCAAACTCGG AAATGGCACG TCCCTAA
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| Protein sequence | MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKAN IYKGKITRVE PSLEAAFVDY
GAERHGFLPL KEIAREYFPK GYSFQGRPNI KEVVKEGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKAAMSELEV PQGMGLIVRT AGVGKDAAEL
KWDLKVLQHH WAAIEEAAQN RPAPFLIHQE SNVIVRAIRD YLRRDVGEVL IDHQRIYEQA
KQHVALVRPD FVDRIKRYEA EVPLFTHFQI ETQIESAFQR EVRLPSGGSI VIDPTEALTS
IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN
RMRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HLCPRCHGQG TIRGTESLAL
SILRLMEEEA IKENTSQIEA IVPVDVAAFL LNEKRKAIRI TEQRHDVEVY VIPDPNMTTP
DYRVTRHRKD DQISESSYKL LEQPESKLYE PRKLERAASP EPALKGFSTP VKDAPTQAAP
APAKPAEKAQ EPGLIAKLFA AIGKLFGGEP EQPKEEVKKE QPRRNAQNRN SRRNNRRNDT
RKSRDEGKET DNKRSRSAKP DDADSRSAKS RNEKRQKRDR DDKPQSQSKD TESQAQQPKQ
EAARERRQRR NMRRKVRVQS EQQLADEAAL AIEVAEKAND EQVQVPAAEA TADDKPQRQK
RQPRKSKPKQ DKADKLEEET QAEQVADEDT ASEQPAVETQ AANEPKDTEV TTQVEAHADE
AQAEEASAQP QEGESEGKRE PREGQRRSRR SPRHLRAAGQ RRRRDEEGNG EVNNGEPAFI
PNEVETAPLL GEQLEQEGSV VEAVSEVQAT ATEQEAVKQE ADEVTTVAET TVTETTVTET
TVAEEAPAKA AAEEASQEES KPKPRRRAPK AKVASEEETS VEEAQQSLPL AGEAKASLKE
EVQAELDLTS TPEEVKASQE AAPQAEDVAA QAEEPAAVET APVETPEVET EAKTEAPAAK
ESSAASAPMA KPAAVPAPTA KVKPAAKVEA TPAEDKPEET ASDEAEKPAP KATSRFGSMV
SSTMTKPEVE ARALVDTPSG RQYEATAKEA SAEPVKRGNS ANSEMARP
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