| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1581 |
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| Symbol | |
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| ID | 4922354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1810819 |
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| End bp | 1811145 |
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| Gene Length | 327 bp |
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| Protein Length | 108 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163143 |
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| Product | type IV pilus assembly PilZ |
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| Protein accession | YP_001093707 |
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| Protein GI | 127512510 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3215] Tfp pilus assembly protein PilZ |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.875524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.520302 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTCGATC TCGTGGTTAA TTTTGATACA TTACATCAGC TATATAGAGC CTACATGCCC
TTCATACAGC CCGCGGGCCT GTTTGTGGCG ACTACCGAAA GCCATTATTT AGGGCAGGAA
CTTACCATCG CCTATCAACT ACCGGGCTCA ACCGTGCGTC ATGAGTTTCA GGGCCTGGTG
GTGTGGATCA ATCCTCTGGG CGCATCCGGT GGCCGACCGG CGGGGATTGG GGTGAAGATA
ATCACCGACG CCCAGACCCA CAAACATCAT ATCGAAAACC TACTTTCCCG CGAACTCGCC
TCAGGCGATT TGACCTGTAC CATGTAG
|
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| Protein sequence | MVDLVVNFDT LHQLYRAYMP FIQPAGLFVA TTESHYLGQE LTIAYQLPGS TVRHEFQGLV
VWINPLGASG GRPAGIGVKI ITDAQTHKHH IENLLSRELA SGDLTCTM
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