Gene Shew_1495 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1495 
Symbol 
ID4922225 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1718148 
End bp1718813 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content57% 
IMG OID640163050 
Producthypothetical protein 
Protein accessionYP_001093621 
Protein GI127512424 
COG category[R] General function prediction only 
COG ID[COG1075] Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAGGA GCCAGCCAGC GATGAAACCC CGCAATGAGT CAGTGATCTT ACTCCATGGT 
TTGGCACGCA CTCGAGGCTC GATGGAGAAG ATGGAACATG CCCTGTCGGC TAAGGGCTAT
CAGTGCGTGA ATCTGGGGTA CCCTTCGACT CAGTTCGATA TCGAGACTTT AGCCGGCGAG
CATATCGACA AGGCGCTGTC ACAGTGCCGG GGTGAGAGAG TGCACTTCGT GACCCATTCC
ATGGGCGGCA TACTGGTGCG CCAATATCTG AGCCAACATA CTTTGCCTGC ACTTGGGCGT
GTGGTCATGC TTGGGCCGCC CAATCGCGGC AGCGAGGTGG TGGATAGCCT CAAAGATTTT
CCCGGGTTTA AGTGGATAAA CGGCCCGGCG GGTCTGCAGC TGGGCACGGA GGAAGAGAGC
GTGCCTAATC GCCTGGGCAA GGCGCACTTT GAGGTGGGAG TGATTGCCGG CAGTCGCAGC
GTGAATTTGC TGCTCTCGAC CCTATTGCCA TGGCCTAACG ATGGTAAGGT CTCTGTGGCC
CGCACCCACC TGGAGGGGAT GCGGGATCAT ATCAGCCTGG CGGTCACCCA TCCCTTCATG
ATGAATAACC CTAGCGTCAT CGCCCAGACG GCGTATTTCT TAGCTCATGG ACGCTTTCAG
CGCTGA
 
Protein sequence
MTRSQPAMKP RNESVILLHG LARTRGSMEK MEHALSAKGY QCVNLGYPST QFDIETLAGE 
HIDKALSQCR GERVHFVTHS MGGILVRQYL SQHTLPALGR VVMLGPPNRG SEVVDSLKDF
PGFKWINGPA GLQLGTEEES VPNRLGKAHF EVGVIAGSRS VNLLLSTLLP WPNDGKVSVA
RTHLEGMRDH ISLAVTHPFM MNNPSVIAQT AYFLAHGRFQ R