| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1477 |
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| Symbol | |
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| ID | 4924101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1702337 |
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| End bp | 1703086 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163032 |
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| Product | anti-ECFsigma factor, ChrR |
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| Protein accession | YP_001093603 |
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| Protein GI | 127512406 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3806] Anti-sigma factor |
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| TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.688237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.852126 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAATC ACCATCCCAA CTCTGATGTT TTGGCGCAAT TTGTCGCAGG TACCTTACCA
GCATCGGTAT CCGTACTGGT CGCCAGCCAT GTGGAGCTAT GTAGCGAGTG TACCCGCGCG
GTGCAGGCCC TCACCGAACA GGCCGCCATC GACGCCTTCG GCGAGTCTAG TCAAGAAGCC
TTACGAGATG CGTCTCAACC CGCTGGCTTA GCGGATGTTT CTGGCTTGGA CGATTTTGAT
GGCTTGGACG ATTTTGATAC TAGCGACCAG TTCGGCGACT CAGACGAGTT TGCTGATTGC
ATTAACGCCA TCACGGCCCT GGAGCGCGAC GATACGCAGC AGTTGCCGCA AACCGTCACC
GAAATTGCCG TGGGCGGCGA GCGTATCCCG CTGCCGACCG CGCTTAGGTC TATCCCCCTT
AAAGAGTGGC AGGGCATGGG CAAGCTATCC CGTTCGCGCC TGGCGCTGGA CGATGGCGAT
CTCAGGATGA GCCTGCTGCA CATAGACAAA GGTGGCAGCG TGCCTTGTCA TACCCACAAA
GGGTTCGAGA TCACCTTGCT GCTGCAGGGC AGCTTCACCG ATGAGATGGG CGAATACCGC
AAGGGCGATT TCATCTGGCT CGACGGTCAA CACACCCATC AGCCGGTGAC GGAGAAGGGC
TGCGTCTGTC TCACGGTATC GAGCGACGCC ATTCGTTTCA CCCAAGGGGT GAGCCAGCTG
CTTAACCCAA TCGGACGATT CATCTATTAG
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| Protein sequence | MINHHPNSDV LAQFVAGTLP ASVSVLVASH VELCSECTRA VQALTEQAAI DAFGESSQEA
LRDASQPAGL ADVSGLDDFD GLDDFDTSDQ FGDSDEFADC INAITALERD DTQQLPQTVT
EIAVGGERIP LPTALRSIPL KEWQGMGKLS RSRLALDDGD LRMSLLHIDK GGSVPCHTHK
GFEITLLLQG SFTDEMGEYR KGDFIWLDGQ HTHQPVTEKG CVCLTVSSDA IRFTQGVSQL
LNPIGRFIY
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