| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1473 |
|---|
| Symbol | |
|---|
| ID | 4921486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1698846 |
|---|
| End bp | 1699730 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640163028 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093599 |
|---|
| Protein GI | 127512402 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00308505 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.913295 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTTT TTGTTAGAGA TTTAACCGTA ATCGATTTTT CTTACCTGTG TCCTATCCGT
GGCATGGTGG GAGAGAGCTG GATCGTCGAT GTGCTGCTCG ATGGCGGCCT GGACGATCAG
AACATGGTGC TGGATTTTGC CAAGGTGAAA CGCACCATCA AGAACACCAT TGACGATGTG
GCCGATCACC GCCTGCTGAT CCCCACCGCC TGCGCAGAGG TGAGATGGCA GCAGCAGGGC
GATCGTGTCT GGATGGACTT CAACAGTCTA CAGGGAGATA TCCATCTCGC CTGTCCTGCC
CAGGCCTTTG CCCTGATCCC GACGGAAATT ATCGATTTCG ACAGTGTTAA TGCCTTCTTG
CAAAAAGCCT TGAAAGAGGT GTTGCCTGAC AACGTGCAGG GAATTGCTCT GACACTGCGT
AACGAGCTGC ATGAAACGCC TTATTATCAC TATTCACATG GCCTGAAGAA GCACGATGGT
AACTGCCAGC GCATCGCTCA CGGTCATCGC AGCCCGATCA ATGTGTTTGA AAATGGTATC
GCCGCGCCTA AGTGGGACGA GTATTGGGCC CGCCGCTGGA AAGATATCTA TCTCGGCAGC
GAAGATGATC TGGTCGAGGT TGACGAGCTG GACCTGTCAC CGCAGACAAG CGTGAGCGAT
GAGACCCACT ATGGTTTCCA TTATGTGGCG CCGCAGGGGG ATTTCCAGCT GGCCATGCCT
AAGAAGCGCT GTGAGATAAT CCCACACGAT ACCACGGTAG AGCTGCTGGC CGACTTTATC
GCCACCACAC TGGCGAGCGA AAACCCAGAG AGTGAATTTA AGGTGATCGC CTATGAAGGC
GTGGGTAAGG GTGCCATCGC CTCTAAAGGC GAGCGCAACG TTTAG
|
|---|
| Protein sequence | MQLFVRDLTV IDFSYLCPIR GMVGESWIVD VLLDGGLDDQ NMVLDFAKVK RTIKNTIDDV
ADHRLLIPTA CAEVRWQQQG DRVWMDFNSL QGDIHLACPA QAFALIPTEI IDFDSVNAFL
QKALKEVLPD NVQGIALTLR NELHETPYYH YSHGLKKHDG NCQRIAHGHR SPINVFENGI
AAPKWDEYWA RRWKDIYLGS EDDLVEVDEL DLSPQTSVSD ETHYGFHYVA PQGDFQLAMP
KKRCEIIPHD TTVELLADFI ATTLASENPE SEFKVIAYEG VGKGAIASKG ERNV
|
|---|
| |