Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1451 |
Symbol | |
ID | 4924152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1671372 |
End bp | 1673201 |
Gene Length | 1830 bp |
Protein Length | 609 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163005 |
Product | ABC transporter-related protein |
Protein accession | YP_001093577 |
Protein GI | 127512380 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.296009 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAAGC GTTTCGAATC ATGGGTTTCC GCCCTACCCG ACCAGGAAGC GGTACAGCCG CCCCGTGGGA TCTACCGGTT TTGCAGGCAT TACACGCGCG GCTTCGAGTT GCCGCTCGCA TTAATGTCGA TACTGACTGC GCTGCTGGCG ATCCTCGAGG TCTCACTGTT TGCGTTTATG GGCGACCTGG TGGATCTGCT CGCCAGCCAC AGCCCAGAGA CCTTGTTTGC CGAGCAGGGT GATAAGTTAC TGCTGATGGC CGTCTTGGTG CTCGTGGTGA TCCCTGTGCT GGTGTTGCTG CACGCCCTGG TGATCTACCA AGGACTCCTG GGTAACTACC CCATGTCAAT CCGCTGGCTC GCCCACAGGT ATCTGCTTAA ACAGAGCATC GCCTTCTATC AGAACGATTT TGCCGGGCGC ATCGCCACCA AGGTGATGCA GACCTCTCTG GCAGTGCGTG AGACGGTCAC TAAGCTGCTG GATGTCTTAG TCTATATTCT GGTCTATTTC CTCTCCATGC TGGTGATCAT CGCCGATGCC GACCTGCGCC TCATGCTGCC TATGCTGGTC TGGCTGATGA TCTATGTGGG GCTGCAATTT TACTACCTGC CTAAGCTGAA ACAGGTCTCG ACCGAACAGG CCGACGCCCG CTCCACCATG ACGGGACGCA TTGTCGACAG CTACACTAAC ATCGCCACTG TGAAGCTGTT TTCTCACACC CAGAAAGAGG CTCAATATGC CAAGGAGAGC ATGACAGGCT TCCTCGATAC GGTTTATCGC CAGATGCGTC TGGTAACCGG CATCAACGTC AGCGTGCAGG TGATTAATTA CTTACTCGCC TTCAGCGTTG CCGCCGTCTC CATCTGGCTG TGGCGCGACA ACGCCATCAC CATAGGTGCC ATAGCCGTGG CGGTCAGTCT CTCTCTCAGG CTCAACGGCA TGTCCCAATG GATCATGTGG GAGATCAGCT CACTATTTGA AAATATCGGC ACGGTCGCCG ACGGCATGAA CACCCTGTCG CGCCCCACCA GTGTGCAGGA CAGCGACAAC GCCAGCCAGC TAACCGTATC AAAGGGCGAG ATCGCCTTTA ACCGGGTCAG CTTCCACTAC GGCGAGGCCA GCGGCGTTAT TGAAGATCTC GATCTCAAGA TAAAACCCGG CGAGAAGGTC GGCCTGGTGG GCCGCTCGGG CGCCGGTAAG TCCACCCTGG TGAACCTGCT GATGCGTTTT CACGACGTGG AACAAGGCAG CATCACCATA GATGGGCAGA ACATTCGCGA AGTGGAACAA GACTCGCTGC GGGCCAACAT AGGCATGGTG ACTCAGGATA CCTCTCTGCT GCATCGCTCC ATTCGCGACA ATATACGCTA CGGCAAGCCG GATGCGAGCG AGGAAGAGCT GGAAAATGCG ATCCGCCAGG CCCAAGCCTA CGAATTTATT CAAGGACTTA GCGATCCAGA GGGCAATCAT GGGCTCGATG CTCAGGTGGG CGAGCGTGGC GTGAAACTGT CAGGCGGTCA GCGCCAGCGT ATCGCTATCG CACGAGTACT GCTAAAGAAC GCCCCTATTC TCTTGCTGGA CGAGGCAACC TCGGCGCTGG ACTCTGAGAT AGAGGCCGCC ATTCAGGAGA GTCTCTATCA ACTGATGGAG GGCAAGACGG TGATAGCCAT CGCCCACCGC CTGTCGACCA TTGCCGCCAT GGACAGATTG ATCGTGTTAG ATCAGGGAAA AATCGTCGAG CAAGGCACAC ACCAGGAACT GATCAAACAG GGTGGGATCT ACGCCCAGCT CTGGGCCCAT CAGACAGGTG GCTTCCTCGG CATAGAGTAA
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Protein sequence | MFKRFESWVS ALPDQEAVQP PRGIYRFCRH YTRGFELPLA LMSILTALLA ILEVSLFAFM GDLVDLLASH SPETLFAEQG DKLLLMAVLV LVVIPVLVLL HALVIYQGLL GNYPMSIRWL AHRYLLKQSI AFYQNDFAGR IATKVMQTSL AVRETVTKLL DVLVYILVYF LSMLVIIADA DLRLMLPMLV WLMIYVGLQF YYLPKLKQVS TEQADARSTM TGRIVDSYTN IATVKLFSHT QKEAQYAKES MTGFLDTVYR QMRLVTGINV SVQVINYLLA FSVAAVSIWL WRDNAITIGA IAVAVSLSLR LNGMSQWIMW EISSLFENIG TVADGMNTLS RPTSVQDSDN ASQLTVSKGE IAFNRVSFHY GEASGVIEDL DLKIKPGEKV GLVGRSGAGK STLVNLLMRF HDVEQGSITI DGQNIREVEQ DSLRANIGMV TQDTSLLHRS IRDNIRYGKP DASEEELENA IRQAQAYEFI QGLSDPEGNH GLDAQVGERG VKLSGGQRQR IAIARVLLKN APILLLDEAT SALDSEIEAA IQESLYQLME GKTVIAIAHR LSTIAAMDRL IVLDQGKIVE QGTHQELIKQ GGIYAQLWAH QTGGFLGIE
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