| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1446 |
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| Symbol | |
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| ID | 4923761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1662719 |
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| End bp | 1663729 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640162985 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001093572 |
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| Protein GI | 127512375 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0272977 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGAC TCAACACCTG TACCTTTATC AAACAGATCG TCAAGATGAC CTCAATCGCG
GCCCTTCTGG GTGCCAGCTT AAACAGCTGG GCGGCGCCAA CGGAAATTAA GTTTTCCCAT
GTGGTGGCCG AAAATACTCC TAAAGGCCAA ATGGCATTGA AGTTCAAGCA ACTAGTAGAA
GAGCGTCTAC CCGGTGAGTA CCAGGTAAAC GTGTTCCCAA ACTCTCAGCT GTTTGGTGAC
AACAACGAGC TCTCCGCCCT GCTACTAAAC GACGTGCAGT TTGTGGCACC ATCGCTCTCC
AAGTTCGAGC GCTACACCAA GAAGCTGCAG CTATTCGATC TACCTTTCCT CTTCAAAGAC
ATGGACGCCG TTAACCGTTT CCAACAGAGC GACGCCGGCC AGCAACTGCT GAACTCGATG
AAGCGTAAGG GCGTCGTCGG CCTGGGTTAC CTGCACAATG GTATGAAGCA GTTCTCGGCC
AGTAGCCCGC TTGTCCTGCC AGAAGATGCC CAGGGTAAGA AGTTCCGTAT CATGGCCTCA
GACGTGTTGG CGGCCCAGTT CCAGGCGGTC GAAGCTATTC CGGTGAAGAA GCCCTTCTCT
GAAGTCTTCA CCCTATTGCA AACCCGCGCC ATCGATGGTC AGGAAAACAC CTGGTCTAAC
ATCTACTCGA AGAAGTTCTA CGAAGTACAG AGCAACATCA CAGAGAGTAA CCACGGTGTG
CTCGATTACA TGGTGGTCAC CTCAAACACC TTCTGGAAGT CGCTACCCGC CGACAAGCGC
AAGGTGATCA AGGCATCGCT GGATGAAGCC ATTGCCTATG GTAATGAGAT CGCCGCGGCT
AAAGTGAACA AAGACAAGCA GGCAATCATC GACTCTAAGC GTTCTGAGGT CACCTACCTG
ACGCCAGAGC AGCGCGCCGC CTGGGTCAAC GCCATGAAAC CAGTATGGGC ACAGTTCGAA
GATAAGATAG GTAAAGATCT TATCGATGCC GCCGTTGCCT CAAACGAATA A
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| Protein sequence | MTRLNTCTFI KQIVKMTSIA ALLGASLNSW AAPTEIKFSH VVAENTPKGQ MALKFKQLVE
ERLPGEYQVN VFPNSQLFGD NNELSALLLN DVQFVAPSLS KFERYTKKLQ LFDLPFLFKD
MDAVNRFQQS DAGQQLLNSM KRKGVVGLGY LHNGMKQFSA SSPLVLPEDA QGKKFRIMAS
DVLAAQFQAV EAIPVKKPFS EVFTLLQTRA IDGQENTWSN IYSKKFYEVQ SNITESNHGV
LDYMVVTSNT FWKSLPADKR KVIKASLDEA IAYGNEIAAA KVNKDKQAII DSKRSEVTYL
TPEQRAAWVN AMKPVWAQFE DKIGKDLIDA AVASNE
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