| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1409 |
|---|
| Symbol | |
|---|
| ID | 4923241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1622440 |
|---|
| End bp | 1623570 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640162950 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093537 |
|---|
| Protein GI | 127512340 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.872031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0084702 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTG GAATCGTTAC ATTTCATCGC GCGTTAAATT ATGGCGCAGT GTTACAAGCA
TGTGCAATGC GCAGGATATT TAGTGACCAT GGCGAAGTCG AGATGGTTGA TTATTGGCCT
GATTATCATA GTTCTCATTA CTCGTTACTT GACACGCGCT TTTTGAATAA AAATCAATCA
CTATCAAGTC GAGTAAGGCT GCTTAAGTCT GCTATTAAAC GCATTATATT GCTGCCAGTT
CGGTTGAAAA GGAATAAAAA GTTTTTATCC TTTATCGATT CTAATATAGT AAAAGTTTCT
AATGCTCCAA TAAAATTGGC AAACAAAATA CCTGATTATT TTGATGTAGT CGTATATGGA
AGTGATCAAA TTTGGCGTGT GTATGATTTT GATAATTACC CTAGACCAGA CATGGTATAT
ATGGGCGCTG GTGTTTTAGA CGGAACTAGG AAAATAGCAT TTGCAGCAAG TATGGGGGAT
GTTAACGTTG ATACACTATG TGATGATAGT GTTATTAAAG CTCTTAAAAA TTTTGAACAT
ATAAACGTTA GAGAACAAGC TTTGAGTGAA TCTTTACTAA AGCATTCAGG ACTTTCCTCT
TGCGTAGTGT TAGATCCAAC TTTTTTAGTT AGTTCTGATG TTTGGAAGAG AATGGCTGAA
ACAATACCAA GAAATAGGAA AGATAATAAA TATGCACTTT TTTATAGCTT GATTCCTTCA
GAGGAGTCTA TACGGATTGC TAAAAATATA GCCGAAGAGA AAGGCGTTGA GTTAGTTGAG
ATTAATGGTT TTGAGACTAT AGGTGGATTG TTTAATAAGT CGGTGGCTCA GTCGGCAGGT
CCTTTGGATT TCCTTGAACT TATTATGAAT GCAGAGTTTA TTGTATCTAC TTCATTCCAT
GGTGTTGTTT TTTCGATCAT TTTTGAGAAG CAATTCTGTG CTTGCGGCAT GAAGGGGCAC
TCTGAAAGAG TTAGGAGTTT ACTTTCTAAG CTTTCTATAG AAGACAGGCT AATAGATACT
GTTGAACAGT TAGAATCTCT TGGTGAAATT GACTATAAAG AGGTGACTAA ATTATTAGCT
AGGGAAATAG AACATTCAAA AGAGTTACTC GAATATTCGT TATTTGAATG A
|
|---|
| Protein sequence | MKIGIVTFHR ALNYGAVLQA CAMRRIFSDH GEVEMVDYWP DYHSSHYSLL DTRFLNKNQS
LSSRVRLLKS AIKRIILLPV RLKRNKKFLS FIDSNIVKVS NAPIKLANKI PDYFDVVVYG
SDQIWRVYDF DNYPRPDMVY MGAGVLDGTR KIAFAASMGD VNVDTLCDDS VIKALKNFEH
INVREQALSE SLLKHSGLSS CVVLDPTFLV SSDVWKRMAE TIPRNRKDNK YALFYSLIPS
EESIRIAKNI AEEKGVELVE INGFETIGGL FNKSVAQSAG PLDFLELIMN AEFIVSTSFH
GVVFSIIFEK QFCACGMKGH SERVRSLLSK LSIEDRLIDT VEQLESLGEI DYKEVTKLLA
REIEHSKELL EYSLFE
|
|---|
| |