| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1400 |
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| Symbol | |
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| ID | 4923834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1612600 |
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| End bp | 1613574 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640162941 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_001093528 |
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| Protein GI | 127512331 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00684666 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCACCG AGATAAAAAA CTACGGCGAT GCCCAATTTT CCGATATGCG CGCTCAAGTA
CAACAAGCTA ATGATGAAAT AGACCTTAGA GAACTGTTTT CAGTCATCTG GCAAGGCAAG
TGGTTAATTA TAGCCATAAC GGCCGTATTT GCGATTGGTT CGGTTGTTTT TGCGATTATG
CAGCCTAATA TCTATAAATC TGAGGCGCTT TTAGCCCCCG CAAGTGAGGA GCAAGGAGGC
GGTTTAAGTG CTTTAGCTTC TCAGTTTGGC GGCTTAGCGA GTATGGCTGG TATTAACTTA
GGTAGCGGCG GTGGCGTTGA TAAGACTAAG ATGGCCATTG AGGTGATGAA ATCGCGCCAG
TTTGCGAGTG ATTTCATTAA AAAGCACAAT CTTTTACCTG ATTTGATGGC CGCAGAAAAA
TGGAACATGG CTGATAACGG CATTGTCTAT GACAATGAGT TATATGATGT TGAATCAAAA
AAATGGGTAA GAGAAGTTAA AGCCCCTTTC AAGCCTGAAC CATCAATGCA GGAAGCTTTT
AAAGAATTTA GCAAAGTAGT TAGTGTTAAC TCAGCAAAGG ACACTGGCAT GGTAACCGTA
TCTGTAGAGC ATTTATCGCC AGCGGTTGCT CAACAATGGG TCAATTGGCT AGTTGAAGAT
ATCAATAAAG TCATGAAAGA GCGTGATGTA GCAGAGGCTA TCCGCAGCAG CGACTTTTTA
AACAAGCAAA TTGCACAGAC GAACGTTGCT GATATACGCG CTATTTTATA CAAGCTAATC
GAAGAGCAAG CCAAAACCAT TATGTTCGCT GAAGTACGTG ATGAATATGT ATTCAAGACG
ATCGACCCAG CATTGGTCCC TGAAGAAAAG GCCAAACCCA AAAGAGCACT AATATGTGTA
TTAGGTACCA TGCTAGGTGG TATGTTAGCT GTAATGCTGG TTCTTATAAA ATATTTCGTA
AGAAGAGAAA GCTAG
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| Protein sequence | MSTEIKNYGD AQFSDMRAQV QQANDEIDLR ELFSVIWQGK WLIIAITAVF AIGSVVFAIM
QPNIYKSEAL LAPASEEQGG GLSALASQFG GLASMAGINL GSGGGVDKTK MAIEVMKSRQ
FASDFIKKHN LLPDLMAAEK WNMADNGIVY DNELYDVESK KWVREVKAPF KPEPSMQEAF
KEFSKVVSVN SAKDTGMVTV SVEHLSPAVA QQWVNWLVED INKVMKERDV AEAIRSSDFL
NKQIAQTNVA DIRAILYKLI EEQAKTIMFA EVRDEYVFKT IDPALVPEEK AKPKRALICV
LGTMLGGMLA VMLVLIKYFV RRES
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